RNA id: TCONS_00005758


Basic Information

Item Value
RNA id TCONS_00005758
length 1459
lncRNA type intronic
GC content 0.28
exon number 2
gene id XLOC_002703
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19518885 ~ 19521704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTCTGCTGAGTTGAAGGGATCCTCCTGTCAGACAACCTCTCCAAAGTACAATAGGACTAggttcccactacaaggattagatttggctactgcagtcccggtttgggccagactcacttgtgaagactaaagatgaagacaacatacaagaacaatttagaggatggcgacacactttttattccacctatatacccccttttatgtgtaagcaacattccacaagataaaacaaaactaaatgacaggttatttcttttcattttgtctgttttcttggaacattgtacacaatttacaaccagttttattatatatatatatataggtcagagcaagaaaatgttatgttttcttctggagaaagtcttatttcttttatttcggctagaataaaaacagttttgatttttaaaaaaaacattttaaggtcaatattattagcccctttaagcaattttttcagactgtctacagaacaaaccatcgatatacaataacttgcctaattaccctaacctgcctagttaagcctctaaatgtcactttaagctgtatagaagtgtcttgaagaatatctagtcaaatatcatttactcagttattagaaatgagttattaaaactattgtgattagaaatgtgttaaaaaatatttccgttaaacaaaaattaagggattatatatatatatatatgtatgtatatgtatatataatcccttaatttctgtttaacggaaatatttttatatacattgtatatataaatatatatatatataatgacaaaatctgttttgtgtcatgcattagagtttgcttaaaaaaactggttatctctgagaaagtattgttattttatattattgatgtgttattagttcagaggagattgcaatttgttgaatgccatttataaaaattttttttttaaattgactacagactttaataagattttatcagacaattattttaatttgtatcattttatttactactgtaaatattgtttgcttggtatttattttgtgtttgtgtactcttttattattgtaactccctgaagaaagtcttttggatactgaacacatgactggtattatcttgtattttaaaattatagtcttggaaacatgcattttctttaacactatttaagaaattataagcaatataacatgtgcttacacaagttatttgtgtttttactatagtaaactatagtcacccttagtgtacatgttttgaagtacttgtaAATATTCCTATGGTCCTAATATAAATGCTGCAATGGACTTTGTATTTAAATCTTTATTGCACAGTATTTCAGCCATGGTTATAGTAcaacttgttggttttgttttaaacgtagtaaaacatggttatgtgtgataaaagtatgttaatctatttgtatgtttgtgaaaaatattaataaatcttcaactgtta

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006031 lncRNA downstream 426279 19088996 ~ 19092606 (-) True XLOC_002701
TCONS_00006030 lncRNA downstream 1231942 18284414 ~ 18286943 (-) True XLOC_002698
TCONS_00006029 lncRNA downstream 1235929 18274014 ~ 18282956 (-) True XLOC_002697
TCONS_00005014 lncRNA downstream 1530136 17988134 ~ 17988749 (-) True XLOC_002696
TCONS_00006028 lncRNA downstream 1607346 17900311 ~ 17911539 (-) True XLOC_002695
TCONS_00006032 lncRNA upstream 409594 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005030 lncRNA upstream 581911 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00005031 lncRNA upstream 622093 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00006033 lncRNA upstream 712310 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005037 lncRNA upstream 926935 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005024 mRNA downstream 20971 19431403 ~ 19497914 (-) True XLOC_002702
TCONS_00005021 mRNA downstream 506951 18999841 ~ 19011934 (-) False XLOC_002700
TCONS_00005022 mRNA downstream 512306 18999855 ~ 19006579 (-) True XLOC_002700
TCONS_00005016 mRNA downstream 1026268 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005025 mRNA upstream 201321 19723025 ~ 19801651 (-) False XLOC_002704
TCONS_00005026 mRNA upstream 276772 19798476 ~ 19801821 (-) True XLOC_002704
TCONS_00005027 mRNA upstream 512196 20033900 ~ 20065149 (-) True XLOC_002706
TCONS_00005028 mRNA upstream 581363 20103067 ~ 20106012 (-) False XLOC_002707
TCONS_00005029 mRNA upstream 581881 20103585 ~ 20105553 (-) False XLOC_002707
TCONS_00005004 other downstream 1891632 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 1948733 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 1975863 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 1999851 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2017481 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 962110 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 1138713 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 1386738 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 1518953 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 2022197 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

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