RNA id: TCONS_00005028


Basic Information

Item Value
RNA id TCONS_00005028
length 1318
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_002707
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20103067 ~ 20106012 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTAGCTCATCCGGGTCAAAAGTCGTCAGCATGGACACGGGAGATGTGCTCGCATCTCTGGGTGTAGAGGGAGCCACCGCGGCTGCGCATGCGCTCTCTCTTCCAGCTGAGGCCTATGGAAATGATGCCCAGTTGGAGGTAATGTGGGCTATGAAAGCCTACAATCATGCTGAAGTTTACTTCAATCTTATTTCATCAGTTGATCCTAAATTTCTAAAACTAACTAAATCGGACGAGGAGATTTATACTAAATTTCGGGAAGCTTTTCCTGACCTCAATATTCAACTATTGGACCCGGAGCTGCTGAAGTCAGCAGAGGCTAAAGAGAACTGGAGGCCCTTTTGTAACCAGTTTGAAGGTATTGTTGAGGACTTCAACTATGGTACACTACTACGTCTAGACTGTCAAAAGGACTACACTGAAGAGAACACAATATTTGCAACCAGAATCCAGTTTTACGCCATTGAGATTGCCAGAAACAGAGAAGGCTACAATGACATTGTGCACAAAGCCAATTCAAAAACCAAACAACTGAAAAAAGACAAGAGTTAATCATGACTGCATGATCTTTAAAGTGGCCTTCTAGGTGTTGAGGAGACTTTCAACACATCACGTTCAACAATGGAGGAATACCTTTATAAATTCCTGAGATGGAAAGCTTAGATGTTTTTCtgtgtaattgtatttaaaatgGGCTTTTCAGTTGTATTCAAGAGTTGGATGGTGGATAATTTAAGTGAATTTTTCACTAATGTCTGGCaccattttgtttttgtaataaatccAGTTTTTCCCCTCTTAAAAATGAAATGGCTTGTTTGGTTAACTCAACATAACTGCATTTGCAAACAATGTTTTTCCAACTACGACAAGatatcagtgtttcctctaggggttttccagctgtggcggcaggacTTTTTTTACGGAGATCTTTCAATTACCAgtggcattatttcaatgacaaatgttgtgagcgcagtattacaactTGAGATCATTCTTGCAATACGAGCTTGCGTGCTGATTTTCtctgttcatgcacaaaacttcttgcacgccctcaaataaatgctgcttaaGCAGATTTTCTTGTGTGCTCTCAAATAAACCCTACTTTAGCGCATTTGTTACGAGTGTCTCCgacatttattaaatttgctaggaatatttcagAATGTTTCCAATAGACCTCCAGTACGGCATTGATGTGTCccgaagtaaagtgaaacggctataaactccagcaggCTAAAGTCACTGTATGCAGAACCATaaacctttatctataaataaagtataattatggaaactgaaA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-459 Is expressed in several structures, including immature eye; mesoderm; midbrain; musculature system; and sensory system. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1).

Ensembl:

ensembl_id ENSDART00000138120

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006032 lncRNA downstream 106336 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005758 lncRNA downstream 581363 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00006031 lncRNA downstream 1010461 19088996 ~ 19092606 (-) True XLOC_002701
TCONS_00006030 lncRNA downstream 1816124 18284414 ~ 18286943 (-) True XLOC_002698
TCONS_00006029 lncRNA downstream 1820111 18274014 ~ 18282956 (-) True XLOC_002697
TCONS_00005031 lncRNA upstream 37785 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00006033 lncRNA upstream 128002 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005037 lncRNA upstream 342627 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA upstream 346120 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006034 lncRNA upstream 510764 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005027 mRNA downstream 37918 20033900 ~ 20065149 (-) True XLOC_002706
TCONS_00005026 mRNA downstream 301246 19798476 ~ 19801821 (-) True XLOC_002704
TCONS_00005025 mRNA downstream 301416 19723025 ~ 19801651 (-) False XLOC_002704
TCONS_00005023 mRNA downstream 579315 19427474 ~ 19523752 (-) False XLOC_002702
TCONS_00005024 mRNA downstream 605153 19431403 ~ 19497914 (-) True XLOC_002702
TCONS_00005032 mRNA upstream 52826 20158838 ~ 20175118 (-) True XLOC_002709
TCONS_00005033 mRNA upstream 164819 20270831 ~ 20339113 (-) False XLOC_002711
TCONS_00005034 mRNA upstream 180760 20286772 ~ 20339138 (-) True XLOC_002711
TCONS_00005035 mRNA upstream 245401 20351413 ~ 20357013 (-) True XLOC_002712
TCONS_00005036 mRNA upstream 301876 20407888 ~ 20445549 (-) True XLOC_002713
TCONS_00005004 other downstream 2475814 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2532915 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2560045 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 2584033 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2601663 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 377802 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 554405 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 802430 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 934645 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1437889 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08567281_08570808.mRNA True 937 mRNA 0.42 7 CI01000304 8567194 ~ 8570808 (-)