RNA id: TCONS_00005037


Basic Information

Item Value
RNA id TCONS_00005037
length 2659
lncRNA type sense_over
GC content 0.39
exon number 3
gene id XLOC_002714
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20448639 ~ 20456007 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaagaACAACTGAAACAGGAAGAAAACAATGCTTTTGACATCAGTTAGCCTATAAAGAGATattattactcattcattcatttttttcggcttaatccctttattaatctggggtcgccagtcacgccacagtggaatgaaccgcctacttatccagcatacaccgcggacacccttccagctgcaacccaacactggggaaacacccataaactcctGCGTTCACACACTtgcactacgggcaatttagcttattcaattcacctataccatatgtctttgggctgtgggggaaattggaacacccggaggaaaggAACCCGAACACatggagagcatgcaaactccacacagaaacgccttcGCCACaacgagcgaccttcttgctgtgagggcgaggcgatcgtgctacccactgcgccatcgtgtcATCTCAAGGTAATCTCATACTGTACTAACTACCTATTCATCGTACATTAAAGTAAAAACGTAATACAGCACGTACATACAAAATACAGAGGATTGCAGACATGTTTAACGGTTAATTAATGAAATGTCCTGTCATGACTCCTAAACACAATACTGTAGTAAAATAGTAAGTTCGAAAATTACAACTGAAACCGTTTAATGTGCAGAGAGAACATAATGAATATGAAATGGTCCATTTCCAAAAGCACTAACATGAAATTGAAAAGTTGTCAATATTAAGAAAATGAGAAATATAAAAATCCTGTTTtcatatgtatttgtttttgtaaagTCACAGTTGTTACCATTTCTCtaattttagtgtattttttgttaaatcaaaAACGATAAGAGTGAGTTTGACTtccaaatattattaaaatgatcaattGTCATAGAGCACCCTCGACTagacatgggctggtataagactCTCACGGTATGATAACTTTGGATGTCGGTtttatggtattgtgattactgctctaatatatGCTCTTTTcctttttgaacacaatatattttattttaagaaaatattttagaacagtaaacatgtcagactaaataatccaaataaaccattgacttctgctgtcttcgttcatttcaaaaacacagattttttttacagtttataatggcatctttgaatatctttcaaaaaaaaaaaaaaacataaacgaAAAGTCTTGCATATGCCATAGGAATGGTATTGCAGAACATTTTGgccgttttaaaaccttgacttttccaaacaacgttaaaccttaaaaatggttattgtcccatgcccaTGACAGTTTAAAAATAGATCATTCGTATATTTTGACCACTGAACTACTTAAAATGCATCTTAGACACCTGGTCACCTTCTTTAAAtcacttattttttataataaacaattttCATTCTGATTAAAGTATCAATAATTTGAGTAAATGATTGACAGGCTTTTCGTCTTTGGTTTGAACTAAGCCTTTGAAGAGTGTTTTTGGGCACACATATTCATGCTGCACTCATGAAATACCTTCACTGAAATGATTGTCTCTTTGTAAATTGTGTTGCACGGCTAATCTCTTCTATCTCTTCTTATGAGGCATATCTGGTGACATTGTAGTCTGGGTATTAACATGTGCACCCGCAAAGACACTGTCTATATTTCAAAGCACAATTATACGGCAAGTGAAATGCTGCAAAACCACAAATAATATGCCAAACAACTATCAAAATGTAGTTTACACATGAAAACAGTGACAATTTCTTCTGAAGTCACCATCTGGTACGTAAACTTTTTGTTTTGTGATATCCGTATTATAACTGTGTTAGAATCGTCTGGATCAATAAAGGTACATATGTTAAATTCGttgctcttttatttttttagttttgcagGTCTATTCCTCCTCTTCGTCTTGTTTTCTGTCGATCATTGAGatattgtgcgtgtgtgtgttaatcCGGTGTAAAGCTCAGGTGATGGATGAGCAGTATGGGATTATGGAGAGGAGCTGCTGAGGTGTTTTGTGTTTAATTCCTCCACACTGTTCCTGCCGGTCTCTCCTGAAACTCCTCAACATGAAGACTCTCCTCGCCATGCTTGTCCTGTTGGCTGCTGTCATACACAGTGACGGCTTGAAGTGTTACTCATGTGTGGCGAGTAACTCAGACGAGTGTTTCCGGCAGGGCTCCACTGTGTGTCCCGCTCATGCAGATGCCTGCTCCACTATTACCAGCCACAACTCTGTAATGAAGTCATGCGCTTATAAGTCGTTCTGTGACAAGTCTCACATGAGCAATGGAGAGATGAAGCTGGAGTGCTGCTATAATGACGACTGCAACGGCCCTCATCGCTCCCACAGCCACGGGGAGCCCGGCAGCGCCCTGAGCCTGAGCTCCAGCCCCATCCTGCTGCTGACCGTCCTGCTGATCCCTCTGACCCTCAGCTCACTCTAAACCCAAAACACAAACTGAGAGAATTAAGCCCTCCTCTGATGGAGTGAAGCTGTAATGTAACTGATAGATGAGCTTTTGTCTACGAGGCGGCAGAATAATCTGTGTGTGTTCTTGCTGTTGGACAAATACTGGTTAATAAACACTGCATAggttgtgtgtttgtctgtttttgtgttGTATATGAGCTCAAATGAGCATCTGctaaacaaatcaataaagtAATGACCAGTGT

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0006810 transport biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0030141 secretory granule cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0016020 membrane cellular_component
GO:0098793 presynapse cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006033 lncRNA downstream 211668 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005031 lncRNA downstream 297311 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005030 lncRNA downstream 342627 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00006032 lncRNA downstream 451908 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005758 lncRNA downstream 926935 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00006034 lncRNA upstream 160769 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005059 lncRNA upstream 386911 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 1114189 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 1114354 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 1116751 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00005036 mRNA downstream 3090 20407888 ~ 20445549 (-) True XLOC_002713
TCONS_00005035 mRNA downstream 91626 20351413 ~ 20357013 (-) True XLOC_002712
TCONS_00005034 mRNA downstream 109501 20286772 ~ 20339138 (-) True XLOC_002711
TCONS_00005033 mRNA downstream 109526 20270831 ~ 20339113 (-) False XLOC_002711
TCONS_00005032 mRNA downstream 273521 20158838 ~ 20175118 (-) True XLOC_002709
TCONS_00005041 mRNA upstream 4544 20460551 ~ 20481763 (-) False XLOC_002715
TCONS_00005040 mRNA upstream 4544 20460551 ~ 20481763 (-) True XLOC_002715
TCONS_00005043 mRNA upstream 47879 20503886 ~ 20523405 (-) False XLOC_002717
TCONS_00005044 mRNA upstream 47879 20503886 ~ 20524592 (-) False XLOC_002717
TCONS_00005045 mRNA upstream 59429 20515436 ~ 20524387 (-) True XLOC_002717
TCONS_00005004 other downstream 2821386 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2878487 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2905617 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 2929605 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2947235 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 27807 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 204410 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 452435 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 584650 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1087894 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

//