RNA id: TCONS_00005040


Basic Information

Item Value
RNA id TCONS_00005040
length 2274
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_002715
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20460551 ~ 20481763 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGGCTGTCACCCGTCCAATGGGCCAAATGGACCTGGTCTGCCGTTagaggaggaggagaggaggaAGGTGAGACTGATTTGGGGATGGACGACGAACCCCTCACGGAAGAGGCGAGAGAGACTATACCACGATATCAAGAGGACGACGAAAGATCTCATGGCTGCAGTTCGGATTCAGAAGGACAGTTTGAGACGCCTGAAGCTGAGACACCTGTCCATCAGCCATTTAAAGAACTATCAGCACtggatcagccaatcacagagaGCTCAGGTTTCTCAGAAGAATATGTAAATCATTTGACTGCCATCACAACAAAAACTCAGAATCTGACCTTGGAAAAGAGCTTTGCTGAGGATGCACCTGCAACAGTCCTGCGGCAGAGCAGTCTGGACTCCACCCCAACCCTGAAACCTAAGTACCAGCTTTCATCTGTTGACATGGATGTGGACCAGCCTGATCCTGATGATGCAGGTGCAACAGAACACAGCAATATCTGCAATGGTCACATTGAGGAACCATCATCAAAACCACAGACCAAGTCTCTCAAGGTTAGACCTCCTTCTCTCCAAGTGAAGTCCCCACTGAATGGTGTTGACCCCAACGAGGTGGACGATGATCCTCCGATACTTCCGAAGGGGAGCTATAACTTTGACCTTGATCAGGTTAATGAAACCATGAATCCATTTCCAACTGGTGGGTCCAAGTTGCAGAATTCTCCACCTGCCAATGCGAGTATTCCTAAATCAGAGTTGATGGATGAAATGCCTGCACAGCCAGTTTTGCTTGAGTTTGGACTTGATGATACTGAAGTCAAGACAGACCCACCCAAAAAGTCTGGAAAAAAGACAAGCAGCAAGCTGACTACTCCAAAAAAACTGCGCCCAAAAGCTGCAGAAACTGCAGCTCCACTACCAGAGACATCCTCAGAACAAAGCCAACAACCACCTGAAAACGCGGATCTCATCAACGTTGATGATATTCCTATTCCTAAAAAATCCTACAACTTTGACCCAAATCAGTGGGACGATCCCAACTTTGATCCATTTGGTGGGAAACAAAAACTTAGCAGCTCGCCGACGCTTCCTAAAGGATCGTATAGTTTTGACCCAGATACATTTGATGACTCTGTTGACCCTTTTAAGTCATCAAAGTCTTTAGGTGGAAGTGACTCTGTTAAACCAACATCTGAGAAGCTAACAGAGAAACTCAAATCTGACGGAACTCCAGAGCAGCGTAAGAAAGCTGGACAGTCTCCGAAAAAAAGCAAAGACAGGATCCTCACGAATTCATGTAAAGTCAAGAAGTATGAGAATCAGTCCTTAGTCCTGGATGTCTGTGATCAGGAGAATGATGTGCAGGAGGACTCCGGGTCTAAACTGTCCAACCGAGTCCATCATGCCACAGACGAAGAGAAATTGGCCTCCACTGTCATGATCCAAAAGGACGGGACAGAGGAGTTTTCAGACTACAAAACAACCACCTGTACCAAGACTGCAGATGatCTGCCAGTAGGAATAACAGAGCAATTTGAAGAAAAAGATCTCTCCTCTCCGAGTGAGAGTCTGTGTAAAAGTTATACTCTGAGCTCTTCAGACAGTGAGACCATAGTGAAGACAAGTCCAGGGCTCGATTCCATCCCTCTCAGTGAGATTGATAAAGCAGCAGTGCTCACGCTGATCAGAGAAGAGATAATTGCCAAAGAGATTGAAGCCaatgaatggaagaggaaatatgaggAGGGTAAACTGGAGGTCACTGAAATGAGGAAAATAGTGGATGAATATGAGAAGACGGTAGCGCAGATGATAGAAGACGAGCAGCGAAAGAACATAGGATCTCAGAAAAGTGTCCAGCAGTTAACTTTAGAGAGAGATCAGGCTCTCGCTGACCTTAACTCAGTGGAGCGATCGCTGTCTGATCTGTTCAGGCGCTACGAAAATATGAAGACTGTCCTCGAAGGCTTTAAGAAGAATGAGGAAGTGCTGAAGAAGTGCGCTCAGGATTACCTTACACGTGTGAGGCAGGAGGAACAGCGTTATCAGACCCTCAAAATCCACGCTGAGGAGAAACTTGACAAAGCGAATGAGGAAATAGCTCAGGTGCGATCTAAGGCCAATGCAGAGAGTGTGGCGCTGAATGCCAGCCTGAGAAAAGAGCAGATGAAGGTGGACTCCCTGGAGCGGGCGCTCGAACAGAAGAATCAAGAAATTGAAGAGCTCACTAAAATTTGTGATGAGCTCATTGCAAAACTGGGCACAACGGACTAA

Function

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0008283 cell population proliferation biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-090521-5 Predicted to be involved in cell population proliferation and microtubule cytoskeleton organization. Predicted to act upstream of or within mitotic spindle organization. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human TACC1 (transforming acidic coiled-coil containing protein 1).

Ensembl:

ensembl_id ENSDART00000091156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005037 lncRNA downstream 4544 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 6558 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 223580 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005031 lncRNA downstream 309223 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005030 lncRNA downstream 354539 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00006034 lncRNA upstream 135013 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005059 lncRNA upstream 361155 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 1088433 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 1088598 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 1090995 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00005038 mRNA downstream 6556 20448640 ~ 20453995 (-) False XLOC_002714
TCONS_00005036 mRNA downstream 15002 20407888 ~ 20445549 (-) True XLOC_002713
TCONS_00005035 mRNA downstream 103538 20351413 ~ 20357013 (-) True XLOC_002712
TCONS_00005034 mRNA downstream 121413 20286772 ~ 20339138 (-) True XLOC_002711
TCONS_00005033 mRNA downstream 121438 20270831 ~ 20339113 (-) False XLOC_002711
TCONS_00005043 mRNA upstream 22123 20503886 ~ 20523405 (-) False XLOC_002717
TCONS_00005044 mRNA upstream 22123 20503886 ~ 20524592 (-) False XLOC_002717
TCONS_00005045 mRNA upstream 33673 20515436 ~ 20524387 (-) True XLOC_002717
TCONS_00005046 mRNA upstream 45664 20527427 ~ 20537000 (-) False XLOC_002718
TCONS_00005047 mRNA upstream 46098 20527861 ~ 20537062 (-) True XLOC_002718
TCONS_00005004 other downstream 2833298 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2890399 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2917529 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 2941517 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2959147 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 2051 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 178654 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 426679 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 558894 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1062138 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08789401_08798907.mRNA True 2432 mRNA 0.47 12 CI01000304 8789228 ~ 8799033 (-)