RNA id: TCONS_00005047


Basic Information

Item Value
RNA id TCONS_00005047
length 969
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_002718
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20527427 ~ 20537062 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCGATTCGAGCATCACTGAGAGTACTGACGTGTTCATGTCAGTGTTCGCAGTGCCTCGTCAGAGCTGCTCTTCATCGCTGCTCATCTTCTGCGGCTGCTGGACATGTCAAATATATATGATAGACATCACGAGGTTCTGCTCCGGTGGCTGCTCTCAACAGCCGACGAGGCGACGGTTTAGACGGAAAAGGAAAGAATCCGAAGGTTTTAGGAGCAGGTGACTTCAATGACAAACCAAGACCAAAGATGAGGAAGACTATTGATAATGGCTTCATTGCTGAAGTTGCTGTACGGCTGCTGCTCTTGGGTCTGTTTCTaGTTACAGAGGAACTTCCTCCATTCAGCCGTGAGATCCAGCCGGAGGAGCTCTGGCTCTATAAGTTTCACCCTGTTAAAAAGGACCGTGTTCCTACACGCTTCATGTTTGCCATCGCCCTCTTCACGCCACTGCTGGTTATTTTCTTATTTGCCTTCTTGAAACAAGGTGGAAAGGGAGATTTAAAAGAGGCGTCTCTGGCTGTGACTTTGACCCTGGTGTTAAATGGAGTTTTCACTAATGCAGTCAAGCTCGCCGTGGGAAGGCCTCGGCCTGATTTCTTCTACCGTTGTTTTCCGGATGGCCAGATGAACCCAGAGCTTCACTGTAGCGGAGACCCAGATGTAGTAATGGAAGGCAGGAAGAGCTTTCCAAGTGGACACTCATCCTTTGCGTTTGCAGGTTTGGGCTTCACGGCTCTATATGTAGCAGGGAAGCTGCACTGTTTCAGCACAGCAGGTCAAGGTAAAGCCTGGAGGTTGTGTGCCTTCCTCACCCCGCTCCTCTTCGCTATCCTGATCGCCCTCTCCAGAACATGTGACTACAAGCATCACTGGCAAGATGTGCTAGTGGGCTCTCTCCTCGGCTTGGTCTTCTCCTACTTATGTTACCGTCAGCATTACCCAGCTCTCAATGAGCCAGACTGCCAC

Function

GO:

id name namespace
GO:0046839 phospholipid dephosphorylation biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-54 Predicted to enable phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation. Predicted to act upstream of or within phospholipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLPP5 (phospholipid phosphatase 5).

Ensembl:

ensembl_id ENSDART00000135341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005037 lncRNA downstream 71854 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 73868 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 290890 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005031 lncRNA downstream 376533 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005030 lncRNA downstream 421849 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00006034 lncRNA upstream 79714 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005059 lncRNA upstream 305856 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 1033134 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 1033299 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 1035696 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00005044 mRNA downstream 3269 20503886 ~ 20524592 (-) False XLOC_002717
TCONS_00005045 mRNA downstream 3474 20515436 ~ 20524387 (-) True XLOC_002717
TCONS_00005043 mRNA downstream 4456 20503886 ~ 20523405 (-) False XLOC_002717
TCONS_00005041 mRNA downstream 46098 20460551 ~ 20481763 (-) False XLOC_002715
TCONS_00005040 mRNA downstream 46098 20460551 ~ 20481763 (-) True XLOC_002715
TCONS_00005049 mRNA upstream 6217 20543279 ~ 20588889 (-) False XLOC_002719
TCONS_00005048 mRNA upstream 6217 20543279 ~ 20588889 (-) False XLOC_002719
TCONS_00005050 mRNA upstream 20773 20557835 ~ 20588787 (-) True XLOC_002719
TCONS_00005051 mRNA upstream 98898 20635960 ~ 20637098 (-) True XLOC_002721
TCONS_00005052 mRNA upstream 103939 20641001 ~ 20650302 (-) False XLOC_002722
TCONS_00005042 other downstream 43931 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005004 other downstream 2900608 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2957709 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2984839 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 3008827 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00005057 other upstream 123355 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 371380 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 503595 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1006839 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005073 other upstream 1033299 21570361 ~ 21573406 (-) False XLOC_002730

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08829163_08833955.mRNA True 1167 mRNA 0.45 7 CI01000304 8828785 ~ 8833955 (-)