RNA id: TCONS_00005072


Basic Information

Item Value
RNA id TCONS_00005072
length 704
lncRNA type retained_intron
GC content 0.36
exon number 4
gene id XLOC_002730
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21570196 ~ 21573457 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acgttctgagtacacagatataagccaaagtcattatcactatatatCACTATATTTGTtggggtcagggaatgatttgtgtacaaatgtattttaaccccatacagattggtatggttgtaccatagatttagattaattaatgttaagtctttttttactcttattatatttatctgtttttcagctacagtaattgatgttgaaaaactgatgctaccaatcactcctcacttgattattcaagcccagattgtgatggacctggaatgcgacaccagttactcttaagacaagaaccgaataaagcacagatgtggagggatttgcagccaaactaactggagggaaggaacctttagtgtgggtgaacatactacctggatgtccaacaaaggctgcacaagagctcatttgatagcacatattctgtcctgtctacatctcggatgacctggaagtgcttcgacatcagatcatcatcatgttgctgccctttttcactgtccctttccacatcatttggccttcatcatttcctgtcttgtagcagtattctcaccttttttaaaattgtaataatttttgatgcattaattgttgactggttttaatgatcaattgtttattagtgttctgttgctctgttatattgaattattgctactgttttagcatggtttacacaataaacctttattgtg

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0022616 DNA strand elongation biological_process
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006271 DNA strand elongation involved in DNA replication biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140030

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005059 lncRNA downstream 681601 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00006034 lncRNA downstream 951548 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005037 lncRNA downstream 1114354 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 1116368 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 1333390 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005074 lncRNA upstream 49 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00006035 lncRNA upstream 55098 21627807 ~ 21649728 (-) True XLOC_002731
TCONS_00006036 lncRNA upstream 73445 21646154 ~ 21821954 (-) False XLOC_002732
TCONS_00006037 lncRNA upstream 73445 21646154 ~ 21843863 (-) False XLOC_002732
TCONS_00005075 lncRNA upstream 241766 21814475 ~ 21843727 (-) True XLOC_002732
TCONS_00005066 mRNA downstream 25244 21541925 ~ 21545117 (-) False XLOC_002729
TCONS_00005067 mRNA downstream 25270 21541927 ~ 21545091 (-) False XLOC_002729
TCONS_00005069 mRNA downstream 27633 21541930 ~ 21542728 (-) False XLOC_002729
TCONS_00005068 mRNA downstream 27659 21541930 ~ 21542702 (-) False XLOC_002729
TCONS_00005065 mRNA downstream 86296 21471316 ~ 21484065 (-) True XLOC_002728
TCONS_00005076 mRNA upstream 288742 21861451 ~ 21890216 (-) False XLOC_002733
TCONS_00005080 mRNA upstream 340396 21913105 ~ 21953643 (-) False XLOC_002734
TCONS_00005079 mRNA upstream 340396 21913105 ~ 21953643 (-) False XLOC_002734
TCONS_00005081 mRNA upstream 366053 21938762 ~ 21941443 (-) True XLOC_002735
TCONS_00005082 mRNA upstream 370858 21943567 ~ 21955231 (-) True XLOC_002734
TCONS_00005070 other downstream 25844 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005063 other downstream 526953 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005060 other downstream 661805 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005057 other downstream 873848 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005042 other downstream 1086431 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005077 other upstream 290357 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005092 other upstream 699080 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005097 other upstream 1179523 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005104 other upstream 1255657 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005129 other upstream 2804708 24377417 ~ 24379776 (-) True XLOC_002767

Expression Profile

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