RNA id: TCONS_00005065


Basic Information

Item Value
RNA id TCONS_00005065
length 3771
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_002728
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21471316 ~ 21484065 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGGTCCGTCCTGTGGTCTGCTGTCGTGCTATGCTACCAGGTCGTGTTACTGTTCTACAGCCCGTTACAGGTGCTGGCCGTGGATAATGTCAACTTTGGAGTGCATGTTGAGAATCAGACTGGGGTTCGGGACGGCCTGAGCCGGAAACACCATCGGGTTTACCAAATCTACAGTCGAACCAGCGGAAAACACGTTCAGGTGCTCGGCAAAAAGATCACTGCCATGGGGGAGGATGGAGACAAATATGCCCAGCTCGTGGTGGAGGCAGACACCTTCGGGAGTCAAGTGAGAATACGAGGAAAAGAAACAAACTACTACTTGTGCATGAACCGCAAGGGGAAGCTCATAGGAAAGAAAGACAGCAGCGTAAACGGAGGCTGCGTTTTCATCGAGATAATGCTTGAGAATAACTACACGGCCTGGATGTCAGCACACTATGTAGGCTGGTACGTTGGCTTTACCAAAAAGGGTCGGCCTCGAAGAGGCCCGAACACGTTACCCAACCAGCGGGACGTGCATTTCATGAAACGCTTTCCTCCAGGAGAACAACCCGACCTGCAGCCCTGCAGCTTCACCACAGTCAGCAAGAGGAGCAAAAGAGTCCAGCAGCCCTCCGCCTCTCCTCCGCCACTGCCATAAAGCGCCAAACACTGACTAGAACTTGTACATTTCATCTAGCAGACTGACTAGAGACGCTCTTGAAAATGTATGTAAGTTAGACATTAGGACCGACCTCTGGGTAGAAGTCAGTCGAAAGATGAGGTTGTTTAAACACTGTGTAACCATGCAAACATAACCAAAGACTCCTGGGCAAGTGTCCAGTCGATTCAACCCTGACAACAAGGGGACCAAGCACTTCAGAGGCCAAAGAATTCACCTCTAAACGTCCAGTGCCACAGACTTTCATCTGTCCCACTATAAAAGAGCAAAGCGATCTACTTATGTGATGTTGAACGGCTGGAAATCTAAGCGCGCTGACTCTGATGCTTTGTGAACGCATCAAAAACATCAACTTTGAGCCAAATTTTTGGAGACTGCACCCAAGAACCAAAGTCAACCTGAATGTATTTGTCGAGAGAATGCTattagaggttttttttttgcctgacatGCGCTTTGCTGTTCACTTTCCAGCAGGAGAACATTAATATTGTTCAGTGATGGAATTACTGGCGACCACTGAAGTGTAATTTAAAGGGAGCAATATAGGCTGTGTACTATTTTGAAGGGATCACCCCTATGCCCTAATCCAAaagtgcccaaactcagtcctggagggctgatgtcctgcatagtttagcttcaattTGCTTCAACATACCTCTCTGGAAGATTCTAGTATACTTAGAAAGTGCTTGATTAGCTTTAGATTGGGGTCTgaggggttggaactaaactctgcaagacaccggccctccaggactgggtTTGTGCAAGCCTGCCCTAACCGTTTCAGAGCTTTGAAGGTATAAggcagggttgtccaaactcagtcctggagggccaatatccagaagagtttagctccaaccctaatcaaacacacttgaaccagctagtcaagctcttactagatatactagaaacttcctggcaggtgtgttaaagcaagttggagataaactctccagcACACAGGCcatccaggacagagtttggacaccctatGTTTAAGGTGTAgctaacaaaaacatttgttcagAACTCACTTCTGTCATCTACAACAAAAAGATGCGCAGAGTGAAGTGCCATCTATTGTACCTTTTGGAATCCTTTAttccaatggtctcaaactcaatttctggagggccgcagctctgcatatttTACTTCCAACCACCTTCAGCTTACACCTGCTTTAAGCTggggtcacactagagtttgtgcttgcaaaattctgtcctACGACcatgcgaaaaggggcgggattaagcaAGACGATAAGAcataaaaaaagcgagcgatttgtttatatttaaatttgtttaaatctaattaataagtgatgcgattttgcaggtaaaagttcaccaagcttgaactttgcaacgcatcGAAGTGCGGAACTTGACGCACGAACTTGCGTTTCCGTTCCGACTCATTTGCGTGTGTATTAATGGAAATCTATGGCAAGAAGAGTTCAGTGCGACTGCAGCTtcatagtctctagtagtcttgaacatctTGAATATTTGGATCTaaagtgtttgattagggttggagcaaaacagtgcagagctgcggccctccaggaatcgagtttgagatcCTATTTTGGAACAGTGCTATAATATAGTGGTCATGATTGTTTTCAATCCAAAGTGCCCTTTGCGAACTGCTTTTGCTGCGTCCCAATTGGCATACTATCCTttctaaatagtatttaaaaatagaattaatatgtCCCAAATcatatgttgaaaagagtatgccaaaggtacccagatggtttactatttccggtaaaaaTGTGAAGTGTAGAAGCGCCCAGACTCTAATCActgatattgcccacagtacATTGGACATCTaatgaattcgattagaactacaaacatgatggacgtGCAAGACCAACTGTtaagagaggcttcggtaaagatgtttgtatgactgctaattaatatctagccaactaaAAATTTTATTGCGTTTTCCGTTTTATTTAATctacaacaatactgaacttctataaagacgtgtttggacatcAACATCTGAATGCAGAACTATCCAAAGACttgaggagatttctctgaaTGAAACATGTGAATGGCAGATTAGCATGCTGCTGCTTCACCAATAAGGTAgaaaaatatgacagaaatgtggatgattgacaggactCATAACCAAGCAACATAACAATCTGTTAACGAGGAAGTAgaatgtcccaaagcttgcatatttTTTTGCTGTTACACACTTCTGTTTCCTTCACAAAATGAGAACATACTTTCAGGGTGTAGtataagtatgcaaattgggacgcagcaagGGTCATGTTCAGAACACAAGTGTGACTACCGTTCAAAAGCTTCAGATCATTTATGTTTTTTGGACTAAAATATTGTGCTGGATTTCATGTGGACATTACTCACATGAGCCTTCATAAATCATTCTGTTTTTGTGCATTTTCTTAAGAATCAACAGTTGAGCTGCTCTAAATTTGTGAAAACtgactttgtttttctttttcagattttCCGATGAATAGAAGGATGTTAAAAATCTCCTTTCAGAATTCTAAAAGGAATAACTTTACTGCCACGTTTGTATGAATCGTAGCGGAATAAATGTATTGATTGGCTTTACATATTGAAAATTGGAAGTATTATGAAGGCTTTATCTGAGATCTCATAAGTCCAACCAAGAAGTACATTTGCCAACCTTGCTGCCATTCACAGCTGTAGTGGATTGAGGCATACTCTTAACATGTACCTTTTTTGCCTACTATATAAGGGAAGCTtgtgatttcagacacagccagcATATTTGACTTTTCCATGATCTGCACTGATGTTTGTGGCATTCTAACAGAACATATCCATTACAGACCACAACATGAGTTGATTTTCTCTCTGGAGCTTTCAATCTATCAGAGTTATTCAGACTGACCCCGGAGCATCCAGCCCTGCAAGTGTTGTAATGCAAAATGTTGTGGTTACCGCTGCAAATTACTCTGTCCCAAAATCACTTGGGGCTGGCGAAATATTGAGATGAAATATTTTGATACTATtcatgttattaaaatatttattttgagga

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0030154 cell differentiation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0030334 regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0005105 type 1 fibroblast growth factor receptor binding molecular_function
GO:0005111 type 2 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050221-4 Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of cell population proliferation; and positive regulation of macromolecule metabolic process. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including heart; midbrain hindbrain boundary; otic vesicle; pharyngeal arch; and sensory system. Orthologous to human FGF18 (fibroblast growth factor 18).

Ensembl:

ensembl_id ENSDART00000064545

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005059 lncRNA downstream 582556 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00006034 lncRNA downstream 852503 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005037 lncRNA downstream 1015309 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 1017323 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 1234345 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005071 lncRNA upstream 86131 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 86296 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 88693 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00006035 lncRNA upstream 143742 21627807 ~ 21649728 (-) True XLOC_002731
TCONS_00006036 lncRNA upstream 162089 21646154 ~ 21821954 (-) False XLOC_002732
TCONS_00005064 mRNA downstream 108996 21359062 ~ 21362320 (-) True XLOC_002727
TCONS_00005061 mRNA downstream 417257 20920364 ~ 21054059 (-) False XLOC_002726
TCONS_00005062 mRNA downstream 424399 21040186 ~ 21046917 (-) False XLOC_002726
TCONS_00005054 mRNA downstream 765046 20653716 ~ 20706270 (-) False XLOC_002723
TCONS_00005066 mRNA upstream 57860 21541925 ~ 21545117 (-) False XLOC_002729
TCONS_00005067 mRNA upstream 57862 21541927 ~ 21545091 (-) False XLOC_002729
TCONS_00005068 mRNA upstream 57865 21541930 ~ 21542702 (-) False XLOC_002729
TCONS_00005069 mRNA upstream 57865 21541930 ~ 21542728 (-) False XLOC_002729
TCONS_00005076 mRNA upstream 377386 21861451 ~ 21890216 (-) False XLOC_002733
TCONS_00005063 other downstream 427908 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005060 other downstream 562760 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005057 other downstream 774803 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005042 other downstream 987386 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005004 other downstream 3844063 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005070 other upstream 59836 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005073 other upstream 86296 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005077 other upstream 379001 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005092 other upstream 787724 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005097 other upstream 1268167 22752232 ~ 22752348 (-) True XLOC_002751

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_09342385_09345935.mRNA True 984 mRNA 0.48 3 CI01000304 9341854 ~ 9345935 (-)