RNA id: TCONS_00005054


Basic Information

Item Value
RNA id TCONS_00005054
length 2337
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_002723
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20653716 ~ 20706270 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGTCGGTTCATCTAATGAAGTACTTCCCGGATGAAGATACGAGTCCGCTgttcgtctctctctctctctctctctctctctctctctctctctctcgccatCCTATGTCACTAGAGATCGAGGGATATTCTTCTGTTTTCACATCTGTCTACAGAACCACCAAAGCAGACAGTGAATGAGAGCGAACATCTGAGGATCCCTCATTCATTCGGTCATCAAAACAGACGCCAGGAACAACATGCAGGCAGATGGACAGAAGGGCGTCGATGGAGGTCTGCTTCCTGATGCCAACGGGCGGGATGGGGACTCCAGCGGGCAGAAGGAGAGCGACGGGAAGTGGCAGAAACCACGCATCACCCGCAAATCCCTCATGAAATGCTGTCTGGTCAAATGGATCATCGCCAGTGCGGCGCCTCAGGGCTCAAGTGACAGCACTGACAGTGAGCTGGAACTGTCCGCTGTTCGCCATCAGCCTGAGGGTCTAGAGCAGCTTCAGGCTCAGACTCAGTTCACCAGGAAGGAGCTGCAGTCGCTTTACAGAGGCTTCAAAAATGAGTGTCCCAGTGGACTGGTGGACGAGGAGACCTTCAAATCCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACCACATATGCACATTTCCTTTTCAATGCCTTTGACATGGACAGAAATGGCTCAATACGATTTGAGGACTTTGTAATCGGCCTGTCTGTTCTGCTTCGAGGTTCGGTGACGGAGAAACTGAGATGGGCCTTCAACTTATACGACATTAACAAGGACGGCTACATCACCAAAGAGGAGATGTTGGCTATCATGAAGTCTATCTATGATATGATGGGCAGATACACTTCTCCTTGTGTCAAAGATGACGCTGCTTTTGAACATGTGGAGAAATTCTTCCAGaaaatggacCGAAACAGGGACGGTGTGGTGACCCTTGAGGAGTTCATCGAGACCTGTCAGAAGGACGAGAACATCATGAGCTCCATGCAGCTGTTTGAGAACGTCATCTAGAGCTCAGCATGAATGATCCTCCATCAAActctcttcacacacacacacagacacttgtGTTTTCTGTTATCTCCAGCATGTGAATGAGTCTTTTGATTGATTGTAATGAATGCTGTGCACAGTTGTCTGCGAGAGGGGATACTGCAGTATGTTGCCGTTTCGATGCTCATTTGTATATATGTAGATAATGTCTGTGCTCTTCAGTTTCTGCCTGGTTTAATGAACGTTCGCATGTTTGCCTGCTGTTTGTCTGAGCCGTTGTCATTTTGTACAAAGGAATAAAGGCAAATGTGAATGAATCCTTCATGTGTGGATGTTCTTACAGTGGTGTGTGAGATATTGATATTGATATGatattgataataatacatttgatttgaaattaaaaacaaaaagtgaaatTGAGGGCAATGCATCCCAACCTAATTATTATGTtcttatcatattttatttatttaatcacattttattgggacagacagacagacagacagacagacagacagatagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagagagtgagagagagaggtggGGGGCTCAAAAATTGCATTTCTTGTTTGTTCAaatgatatttatatatgtaaaattagctgaaacaatacaatttttgACTCTTGAGCTTTCCggggggacagcttaattgttttatgttcaatcaacttacatttgtaaaaaaaaataatcatttaatctaattcctttatgttgtcctaacAAATCAATTGTTACCTAATTTATGTTGTACATACACAACTTGACTGGATAGAGAAACTCACAAATttatgacgtttgctgtttgttcaaactactaaaaaatgagctgaaacaacacaatttttttttttttggggggggggggcaacttaattgttttatgttatgttCTGTTGTTTTATCAACTTCTcataaaacaatgttttgtgaAACAAATCATAAAAACTGATaagttaattccttcatgttgtcccaacacaaaacgatTGTGGAAccctagatagatagatagacagacagacagacagacagacagacagacagacagacagacagacagacagacagactgactgactgactgactgactgactgactgactgactgactgactgactgactgactgactgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgatatttttacagtatatatcaaT

Function

GO:

id name namespace
GO:0031018 endocrine pancreas development biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1752 Predicted to enable calcium ion binding activity. Acts upstream of or within endocrine pancreas development. Is expressed in nervous system; neural tube; pancreatic system; and trigeminal placode. Orthologous to human KCNIP3 (potassium voltage-gated channel interacting protein 3).

Ensembl:

ensembl_id ENSDART00000166540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006034 lncRNA downstream 34903 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005037 lncRNA downstream 197709 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 199723 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 416745 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005031 lncRNA downstream 502388 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005059 lncRNA upstream 136648 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 863926 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 864091 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 866488 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00006035 lncRNA upstream 921537 21627807 ~ 21649728 (-) True XLOC_002731
TCONS_00005052 mRNA downstream 3414 20641001 ~ 20650302 (-) False XLOC_002722
TCONS_00005053 mRNA downstream 3414 20641004 ~ 20650302 (-) True XLOC_002722
TCONS_00005051 mRNA downstream 16618 20635960 ~ 20637098 (-) True XLOC_002721
TCONS_00005049 mRNA downstream 64827 20543279 ~ 20588889 (-) False XLOC_002719
TCONS_00005048 mRNA downstream 64827 20543279 ~ 20588889 (-) False XLOC_002719
TCONS_00005061 mRNA upstream 214094 20920364 ~ 21054059 (-) False XLOC_002726
TCONS_00005062 mRNA upstream 333916 21040186 ~ 21046917 (-) False XLOC_002726
TCONS_00005064 mRNA upstream 652792 21359062 ~ 21362320 (-) True XLOC_002727
TCONS_00005065 mRNA upstream 765046 21471316 ~ 21484065 (-) True XLOC_002728
TCONS_00005066 mRNA upstream 835655 21541925 ~ 21545117 (-) False XLOC_002729
TCONS_00005042 other downstream 169786 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005004 other downstream 3026463 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 3083564 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 3110694 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 3134682 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00005060 other upstream 202172 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 334387 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 837631 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005073 other upstream 864091 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005077 other upstream 1156796 21863066 ~ 21907105 (-) False XLOC_002733

Expression Profile

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