RNA id: TCONS_00005053


Basic Information

Item Value
RNA id TCONS_00005053
length 1653
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_002722
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20641001 ~ 20650302 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCTGACTGAGCGTTTGCAACGAGGAAGAGTCTCGCAGGGAGGGGCGAAGTTTCTTTAACTTGTCAACGGCACACTTTCATCCACGACACTGCCGTTTTCATGGTGACCGGCTGACTTCCAGCACTTTCCTCACTGGTACCGTCATCTTCTCTGATGTCTGAGCGTGAGGCCGACTTGGTTCTGCGTGCTTTGCTGGATTCCTGCACGTGCTGCTTGCACAATAAACTTCATTACTTCATTCTTCCGTGTGTCTCCACTGACCCGACATGGAAAGTGTGGATTCAGACAAGATCCAGGTTGGAGAAAACAAATTTGTCAGCAAGAGTGTTATTCTCTCACATCTCAAAACATATAACGTGTATTTTGAAGGAGATGCCCTTCAGTTGAGACACAGAGAGGAGGAAGGAGAGCTGGTCATAGAGGGTTTGCTCAATGTTTTTTGGGGTGTGCGTCGACCAATCAGATTGCAGATGCAGGACGAGAAGGAGACTGGCAGGCCACGCCCCTTAGTGACACCACTGGACATCAATACAATAAAAAGTAACGAAACACATCAGCCGCCAGTTTCCATTGAGGTCACCGCAGCAGAAGAGCGGTCGAGAGACTCCAGTGAAGAGAAGCAGGAGGCAGGAGAAGGACATCATGAGTCGACTCTTTCTGATCGGCTCAACAGAACCAGAAGTGATGTCAGTGGCAGGAAAATCGGCGGACGACGACTCGGAATCAGGAGAGTCCAAAGACACCGGTGCTCCTTCAACGGACACTTTTATAACCACAAGACGGCGGTTTTTACTCCAGCGGTCGGCTCTGTGACGAATGTGCGCGTCAACAGCTGTATGACGACATCACAGGTGATGCGGGTGTTACTGAACAAGTTCAAGATCGAGAACAGTCCGGATGAATTTAGCCTGTATCTCGTCCACACAAGCGGAGAGAGGCATCAGCTGAAGCCCAATGATCATCCTTTGCTGGTTAGAGTTTTGCAAGGCCCTTGTGAACAGGTCAGCAAAATGTTTCTTATGGAGATGGACCAGGTGGAGGAGGTCACATATGATGTGGCACAATACATCAAGTTTGAGCTTCCTGTTTTACAAAGCTTCATCGCTAAGCTTCAAGAGGAAGAGGAAAGAGAGATGCAGAAACTGAAGACGAGGTATGCTGAAATGCAGCGCATCATCAAGAGATACATGCAGACTTCAAAGTCTAAAAACACCTGATGAAGTTGCTTGTATCCTTCAACACCATCTTTAAAATATTAGTAAATGAAGAACAGTGCTTTCTCAGGAACATGAACGTATTTAacctattacattttatttatataataattattgccTTCTAAAGCTATGATGGCTTCTATAAGTTTGTCTTGATATGGAATGTAAAATGTGTCATGCAAACTTTCACTCATGCACAATTGAATGATTATTTTTCCAgttattaaatattgatttaacGTTAAATTCAAATTGTGAATAAATATACAATGTGAAATTaagaattaataatttataagtcaaatgtattttattgctgATCATTTGTATTAATGTTTATAGGtatcataaatatttaatatacttgttttcttgaatattttctaatgtatatgcacagatcTTTGCTCTTgataataaaaacattgtaaact

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041221-6 Predicted to be involved in positive regulation of protein kinase activity; regulation of intracellular signal transduction; and signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm and nucleus. Orthologous to human RASSF2 (Ras association domain family member 2).

Ensembl:

ensembl_id ENSDART00000064662

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006034 lncRNA downstream 22191 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005037 lncRNA downstream 184997 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 187011 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 404033 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005031 lncRNA downstream 489676 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005059 lncRNA upstream 192616 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 919894 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 920059 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 922456 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00006035 lncRNA upstream 977505 21627807 ~ 21649728 (-) True XLOC_002731
TCONS_00005051 mRNA downstream 3906 20635960 ~ 20637098 (-) True XLOC_002721
TCONS_00005049 mRNA downstream 52115 20543279 ~ 20588889 (-) False XLOC_002719
TCONS_00005048 mRNA downstream 52115 20543279 ~ 20588889 (-) False XLOC_002719
TCONS_00005050 mRNA downstream 52217 20557835 ~ 20588787 (-) True XLOC_002719
TCONS_00005047 mRNA downstream 103942 20527861 ~ 20537062 (-) True XLOC_002718
TCONS_00005054 mRNA upstream 3414 20653716 ~ 20706270 (-) False XLOC_002723
TCONS_00005055 mRNA upstream 4432 20654734 ~ 20706109 (-) False XLOC_002723
TCONS_00005056 mRNA upstream 4731 20655033 ~ 20696518 (-) False XLOC_002723
TCONS_00005058 mRNA upstream 10923 20661225 ~ 20669635 (-) True XLOC_002723
TCONS_00005061 mRNA upstream 270062 20920364 ~ 21054059 (-) False XLOC_002726
TCONS_00005042 other downstream 157074 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005004 other downstream 3013751 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 3070852 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 3097982 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 3121970 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00005057 other upstream 10115 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 258140 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 390355 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 893599 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005073 other upstream 920059 21570361 ~ 21573406 (-) False XLOC_002730

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08904762_08909795.mRNA True 2071 mRNA 0.42 8 CI01000304 8904478 ~ 8910490 (-)