RNA id: TCONS_00005068


Basic Information

Item Value
RNA id TCONS_00005068
length 599
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_002729
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21541925 ~ 21545117 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATACAACCCAGACAGGATCCTCTGCCCCTTTCACTTTGCAAGAACTACTCCAGGGTTCAGACTCAATAAGCCAAGTTGTTTCAGTACCTTCAACCCCATATGTTGCTGTATCATTGCCCCAAGGTGTTACTAGTCAGTCAACATTAGTGCCAAACTTGGATCAGTTAACCTCAGTCTATACCACCCAGACAGGATCCTCTGTCCCTTTCACTTTGCAAGAACTACTCCAGGGTCGAGATTCATCAAGCCAGGTTGTTTATGGACTTTCAAACCCATACGTATCTGTATCAATGCCACCAGTTGTTACTAGTCAGTCAGCTGTGCCAAGTTTAAAGAAGATTACTGCTGTCTATGGCTCTCAGACAGGTTCCTCTGCTCCTTTAACTTTGCAAGGAAGCTATGGTGGACTAATCCAGCCTCAAAATGCCAAAGATGCGTCTTCTACGGGATCTTCATCTTCTGTCCTCCAAACCTCAACCGGTGACTTTTCGAATCCTTCCAGCAGCTTTTCTACCCTAAAACGTTATTACTCTGTCAAGGATTAGAAAACTGTTAAACTGCCATATGGTGCAATGTTTCcaataaaattaagattttt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5478 No description available

Ensembl:

ensembl_id ENSDART00000146761

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005059 lncRNA downstream 653170 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00006034 lncRNA downstream 923117 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005037 lncRNA downstream 1085923 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA downstream 1087937 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006033 lncRNA downstream 1304959 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005071 lncRNA upstream 27494 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005072 lncRNA upstream 27659 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005074 lncRNA upstream 30056 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00006035 lncRNA upstream 85105 21627807 ~ 21649728 (-) True XLOC_002731
TCONS_00006036 lncRNA upstream 103452 21646154 ~ 21821954 (-) False XLOC_002732
TCONS_00005065 mRNA downstream 57865 21471316 ~ 21484065 (-) True XLOC_002728
TCONS_00005064 mRNA downstream 179610 21359062 ~ 21362320 (-) True XLOC_002727
TCONS_00005061 mRNA downstream 487871 20920364 ~ 21054059 (-) False XLOC_002726
TCONS_00005062 mRNA downstream 495013 21040186 ~ 21046917 (-) False XLOC_002726
TCONS_00005058 mRNA downstream 872295 20661225 ~ 20669635 (-) True XLOC_002723
TCONS_00005076 mRNA upstream 318749 21861451 ~ 21890216 (-) False XLOC_002733
TCONS_00005080 mRNA upstream 370403 21913105 ~ 21953643 (-) False XLOC_002734
TCONS_00005079 mRNA upstream 370403 21913105 ~ 21953643 (-) False XLOC_002734
TCONS_00005081 mRNA upstream 396060 21938762 ~ 21941443 (-) True XLOC_002735
TCONS_00005082 mRNA upstream 400865 21943567 ~ 21955231 (-) True XLOC_002734
TCONS_00005063 other downstream 498522 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005060 other downstream 633374 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005057 other downstream 845417 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005042 other downstream 1058000 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005004 other downstream 3914677 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005070 other upstream 1199 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005073 other upstream 27659 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005077 other upstream 320364 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005092 other upstream 729087 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005097 other upstream 1209530 22752232 ~ 22752348 (-) True XLOC_002751

Expression Profile

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