RNA id: TCONS_00006037


Basic Information

Item Value
RNA id TCONS_00006037
length 721
lncRNA type read_through
GC content 0.50
exon number 4
gene id XLOC_002732
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21646154 ~ 21843863 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATAGGAGCACATAATCTCTTCCGTACACAGCTTTTAAAATGGCAAATCAAAATAGGTAGCTGTAAGGTGAATATTTGAAATGGAAGACTGCAGTGTGGAAATATAGCAACAGGACACCTGCCTCTATGATCTGCCATGATAGAATAAACAGATAAACATTGGTGATCGATAGCAGATGAGCAGTCTGaAGAGATTGAGACTCACCGTTTGCTGCTGCCATCATAGCCTGGAGCTGTTCAGCCTCAGTAGGGGGGTTGGGCCATGGTCCTGTTCCTGCTATCACACCAGCACCGGCACCTGCCTCTTCAGGACGTGCTCCAGCCCTAGATGACAGAAAACAGGGAACAGACTGGACAGCATGTCGCTGGAAGCTGCGGGACACATAATCTGAACGACCTAAACACAACATTCCACTAGAAGGCTACGCCAGGTGAAGCCAAACGCTACCACACACTAGCCTTCACTTCGCCTTCACTCTACCTGGACTTCTCGTATGGAGTCCATCTCTGCTGCAGGGTGTGGAACCTGTGTTGGCTGAAACATAAGCACAGGAGCATGCAGCTGTCACTCAATAACCCTGCGTCCACTGAGGACAAGACCAGACTGACCAGAGCACATGGATGGGTTTCCTCTGAGGTCAAACCTTATTTTGCAGCGAacTCCTCTTTCTTCCCGAAAGTGATGAACTCGCCCTTATCATCCACGGCACCTGGGTCCTG

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006400 tRNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0042719 mitochondrial intermembrane space protein transporter complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005074 lncRNA downstream 72697 21572758 ~ 21573457 (-) True XLOC_002730
TCONS_00005072 lncRNA downstream 73445 21570361 ~ 21572709 (-) False XLOC_002730
TCONS_00005071 lncRNA downstream 73858 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005059 lncRNA downstream 757394 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00006034 lncRNA downstream 1027341 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005078 lncRNA upstream 42621 21886484 ~ 21907310 (-) False XLOC_002733
TCONS_00006038 lncRNA upstream 52056 21895919 ~ 21907136 (-) True XLOC_002733
TCONS_00005093 lncRNA upstream 637295 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00006039 lncRNA upstream 686922 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00006040 lncRNA upstream 710486 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00005066 mRNA downstream 101037 21541925 ~ 21545117 (-) False XLOC_002729
TCONS_00005067 mRNA downstream 101063 21541927 ~ 21545091 (-) False XLOC_002729
TCONS_00005069 mRNA downstream 103426 21541930 ~ 21542728 (-) False XLOC_002729
TCONS_00005068 mRNA downstream 103452 21541930 ~ 21542702 (-) False XLOC_002729
TCONS_00005065 mRNA downstream 162089 21471316 ~ 21484065 (-) True XLOC_002728
TCONS_00005076 mRNA upstream 17588 21861451 ~ 21890216 (-) False XLOC_002733
TCONS_00005080 mRNA upstream 69242 21913105 ~ 21953643 (-) False XLOC_002734
TCONS_00005079 mRNA upstream 69242 21913105 ~ 21953643 (-) False XLOC_002734
TCONS_00005081 mRNA upstream 94899 21938762 ~ 21941443 (-) True XLOC_002735
TCONS_00005082 mRNA upstream 99704 21943567 ~ 21955231 (-) True XLOC_002734
TCONS_00005073 other downstream 72748 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005070 other downstream 101637 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005063 other downstream 602746 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005060 other downstream 737598 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005057 other downstream 949641 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005077 other upstream 19203 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005092 other upstream 427926 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005097 other upstream 908369 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005104 other upstream 984503 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005129 other upstream 2533554 24377417 ~ 24379776 (-) True XLOC_002767

Expression Profile

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