RNA id: TCONS_00005093


Basic Information

Item Value
RNA id TCONS_00005093
length 3836
lncRNA type sense_over
GC content 0.40
exon number 5
gene id XLOC_002745
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22481158 ~ 22491458 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCAGAAACGTGTTCGGTATGGAGTAACAGTAGTGTGCTAACAGGaacatacaattacaaaaaaaaaaaaaaacattatgcaaCTTCAAAATGCACATTGCGGATGCAAACGTTTTCAGGTCTGGTGTTGGTTTTGATGGTGTTCGTTTGTTTGGTCTCTCCGCTGCGCCCCATCTGTGACCTGAGGGTTCTGGACCACTTCGTTCGAGAAGCTGGAGATTCAGAAGTCATCATGcgAGGCTGCAGAGGAGGCTGTGGAGTGATGAAATCCTACTTTGTTCCTCTGACAAGAGTTGACTTTGCTGTTTGGGAACATATAGATGTTCAGATGCAGGCCGTGGAGGTCCAGACAGGACTGTCTGTGCTACTTCAGGCACTTAATACGGCCAGGAAAACAGTCAGCAACTCTTCACTATTAAACACACTAGAAAACAACATCAGTAACCTCCACAGTCTGGGCCAGATCATACGCAGCCTCCATTTACAGCAGGCCGAGTCCACAGTTCTTCCAGATGATTCAGCTCCTGCCAGCTCACAGACGCAGGAGGTCTCGTCTCTCCCAGAACTTCTGCAGGTGCAGAGCAGCTTCCTGAGAGGAAAAGTCCGACTCCTGCTTTCAGCTGCTCCAGCCTGCCAACGGCAAAACAGCTGATACCAGATAACCGCCACAAGCTGGACCACAACACTTGATGGAGACATGATACTCCGGCTTGAATCTTAGTTTAACCCTAAAGGagaatcatttactcacccgcaTGTTGCTCCAAAGACTTTTATTCATCTACAGGACCCAAATGAAGATATGTTGAATTAATTCTGAGGGTGCGTTCACACTTGTAAATGCTTTTTGTTCTGGCTGTGGTTcactttcacatggcaaagtttctaaaaaGACCAAAATAGTTGAAACAAGTCACAAGCAGGTAAAATCtgctcacattggtcagagtttggtTTATTTTCCAGGATTCCGCACGGCTGCTATACGTCGTTACTGTAATTtttgttgatgacaaattaatTGGTGTGCTTTAATTCTGAATGGTGACACTTACAGACatttgtttccatccaaagatgccaattaaatttatgtgcaaaacaggAATATCTCATAAAAGACACGTGAAtaaagctgcgtttccatccaatgagccaaagagaacaaaatcgtcacttcctgattaactggcgccaaatatcaacggtaaaaacggaatttgccgcggtaggagaagctgtgtgaatcttttctttaataCAATGAGTGAGCGCAGTGGTGTTTATGGGCGTGAGCcgcagagcacagacgctcttaacAATTCTGGAGGTCAATAATAAtacaacactaatactgaaatggttatggccttttaaaatgaccaaaataacattttagatgttttatagtgtgctcagcctgctggtttgtccattcacacacatttttatcatcacatgatctctaatACCaacatcacatgacttttttcagtgcacatactggaatttgtttgataaaagtgtttccattgtagtttatgctaatcttttcttatagaataaaaagtttaacCGACTCAGTTATTCACATACATTTATTATGCACTAATTATTATACAGTATTTTCAAAACTTATGGGCATTATGGCATTACAATCAaccatttattatatgcatatccaaaatgtgcataaaaataggtggatggaagcaTAGCTAGTGTCACcgaatataaatcagaggtaagactttctcatacatagccttGTTTCAATTGTGAAGGGTTGTAAAAAATATATCGATATCGATATCAGGTCGAGTTAGACAGCATTCTTTTACTGTAGTATTCAACATAAAAAGCACTTTAACCAGTACGACTGATATCTTGGACAAAGAGACTTTGAGTGGAAGAACAGActaaaatttgattaaaataatgtTCATTTGGGTTTCAAagattaacacattttttattatttttttggcttcgTAACGACATTAGGGTGAGTAATTTAGGAGTTTTAATTTTGGCATGAACTAACCTCTTAAAAAGGAGATGAACTGAGAAATTTGCTTGATCTTTTGAAACATAAGAGGTCAGCGcagtttcagaactcaaaatgTCTAAAAACAGCTTACATTGATGACAAACAGCCAAAACATCAAGTTGTTGAATTTTCGGATGATGCTGTGCCAGCTATACTGGAGCGGATAGTCACATCACACCACACAATGATTTTATTACATGTCCATCTATAAAGGATGAAGTATGAACGatgtcaaaatattttattacttctaaaacatttcatttcctctaaacaggggcggactggccatctggcaattttGGCAAATGCTagaagggctggaccattttttaaatgtgggccggcatgctattttctatatatatatttttataagtattgcttttacatgcaggcagcttttgtctcttgcaagatgtggaatataatgatgatgatgatgatattagtaataataataataaatgttttgcattggcccaatcggcaatggcCGGCTGGTtttgagatgggccgacccaatcagaggttacgcggccataatcaaaatctggcaagaatgtcaaaaaaACAGTGAGTGCAACACAAGCTacttgtcagagatggaccgtaaaaaaggaaaggcggtgccGAAAAGCTCAAAGAAAGCAAATgatgccaaatgcataaaattaactgaaatagtctTGAAAGGGGGCAGAGCAATGGGTagcgctgtctcctcacagcaagaaggtcaatggttcgagcctcggctgggtcagttggtgtttctgtgtggagtttgcatgttcgcgtgatTTTCCTcccagtttccctcacaagtccaatcacaaaataaatatttattacatatggtactgtttatattatttccccatctgtacaccaataaaaGTAGTTAATGTGCATGTCCatggatggggctgtgtcggtgtggtaatgtgggctggtttGGCTATATTGCCAGGggtgatttttagtcccagtccacCCTTGCTTCTAAATAAGCTTTCTAATGTACAAATCATCTTAACATCATGAGTAGACCTCATAGAACAGtacaaaacaactgaaaaaaaagtcAGTTCAAGAGCCCTTTAAAGAGCTGGGTGTCATTTGTTTAGAAATCTAGAAGCCTGCAGTTGTGTTTCTAAAGTATGCATCATTTGAGGAGTGAAGCAAAGCGGTAGTGACACCATGACATATTCAGCAAGATAAACATGTCAGAAGAACCTGCACAGGACCACATTAGAGCACACAAGTGGACATGTCGCAGGCTCAAAATCTCATAGCGGTGTCTGCCAGACAAGATGTTCGCGGCTACATGGACTACCACACACCAGAGATACTTTTAATTTCCACGAATTGCTGCTATTTGttcgttttgttttatttactacaGGACACATGCCTTTTTCTGAGTCCTTTATCGTACATCTAACGGCAGGACCAAAGATCTTTTTAGGGTTCAGCAGAGTTCATCATGCAGCCTCAACAAAGTCACTATAAGATATGCTTCCATCTAGAGGACAAACCTGGAAGTTTGACTGAAACTGTAATACTTAGACACCCTTTTGAAAGAAAGAAACAGGCCTGTCAGTATATGTTTAATAACCTTTTTAATGTTGTCCAGTTCAGATACACAACATACAGTGTGTAGTAGCCTGTATAGGAAACAGAAATATGAATTTCAATCTTTCGACCCATTGCGGTCATACAGTCCCCACATCTCAAGCCTTTTTTTAACGTTGCTgaaattcaataaaatgaaactCAAC

Function

GO:

id name namespace
GO:0048753 pigment granule organization biological_process
GO:0007517 muscle organ development biological_process
GO:0050931 pigment cell differentiation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0032438 melanosome organization biological_process
GO:0043473 pigmentation biological_process
GO:0061061 muscle structure development biological_process
GO:0032502 developmental process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0033059 cellular pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0042470 melanosome cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005078 lncRNA downstream 573848 21886484 ~ 21907310 (-) False XLOC_002733
TCONS_00006038 lncRNA downstream 574022 21895919 ~ 21907136 (-) True XLOC_002733
TCONS_00006037 lncRNA downstream 637295 21646154 ~ 21843863 (-) False XLOC_002732
TCONS_00005075 lncRNA downstream 637431 21814475 ~ 21843727 (-) True XLOC_002732
TCONS_00006036 lncRNA downstream 659204 21646154 ~ 21821954 (-) False XLOC_002732
TCONS_00006039 lncRNA upstream 39327 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00006040 lncRNA upstream 62891 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006041 lncRNA upstream 112815 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006042 lncRNA upstream 415939 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006043 lncRNA upstream 1021664 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00005091 mRNA downstream 231714 22161585 ~ 22249444 (-) True XLOC_002743
TCONS_00005090 mRNA downstream 330739 22144768 ~ 22150419 (-) True XLOC_002742
TCONS_00005089 mRNA downstream 353216 22123831 ~ 22127942 (-) True XLOC_002741
TCONS_00005088 mRNA downstream 364037 22110842 ~ 22117121 (-) True XLOC_002740
TCONS_00005087 mRNA downstream 374827 22097328 ~ 22106331 (-) True XLOC_002739
TCONS_00005095 mRNA upstream 3368 22494826 ~ 22497980 (-) True XLOC_002746
TCONS_00005096 mRNA upstream 10305 22501763 ~ 22506044 (-) True XLOC_002747
TCONS_00005098 mRNA upstream 297861 22789319 ~ 22803854 (-) False XLOC_002752
TCONS_00005099 mRNA upstream 297875 22789333 ~ 22803740 (-) False XLOC_002752
TCONS_00005100 mRNA upstream 298286 22789744 ~ 22797959 (-) True XLOC_002752
TCONS_00005092 other downstream 209255 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 574053 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 907752 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005070 other downstream 936641 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005063 other downstream 1437750 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005097 other upstream 260774 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005104 other upstream 336908 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005129 other upstream 1885959 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 1891808 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 1964158 24455616 ~ 24455732 (-) True XLOC_002771

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_09944778_09945833.mRNA True 559 mRNA 0.46 4 CI01000304 9944623 ~ 9945833 (-)