RNA id: TCONS_00006039


Basic Information

Item Value
RNA id TCONS_00006039
length 285
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_002748
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22530785 ~ 22534924 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aattccagAAAGTAACAACATACATACAGAATCACAGCGTCCTCTTGACATGTCTCAGTCAACAGAATCCACACATGCACATCAACACTTTCTGGACAGAAGGCAACGGTTCACATCGTggacagaaaatgaatgacaggGGCAGATGCCAAGTATAGTTTGTGTACAAACAGAGAAGCTACATTTATATACCAAACACAAACCCAGATTGCCCTCTTAGAACAGAGCCAAATGGGCCAAAACAGCACCTCAGTCATACTTGGAAACACTGGAGGGTAAAAACGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005093 lncRNA downstream 39327 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00005078 lncRNA downstream 623475 21886484 ~ 21907310 (-) False XLOC_002733
TCONS_00006038 lncRNA downstream 623649 21895919 ~ 21907136 (-) True XLOC_002733
TCONS_00006037 lncRNA downstream 686922 21646154 ~ 21843863 (-) False XLOC_002732
TCONS_00005075 lncRNA downstream 687058 21814475 ~ 21843727 (-) True XLOC_002732
TCONS_00006040 lncRNA upstream 19425 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006041 lncRNA upstream 69349 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006042 lncRNA upstream 372473 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006043 lncRNA upstream 978198 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00006044 lncRNA upstream 983137 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00005096 mRNA downstream 24741 22501763 ~ 22506044 (-) True XLOC_002747
TCONS_00005095 mRNA downstream 32805 22494826 ~ 22497980 (-) True XLOC_002746
TCONS_00005094 mRNA downstream 39432 22484340 ~ 22491353 (-) True XLOC_002745
TCONS_00005091 mRNA downstream 281341 22161585 ~ 22249444 (-) True XLOC_002743
TCONS_00005090 mRNA downstream 380366 22144768 ~ 22150419 (-) True XLOC_002742
TCONS_00005098 mRNA upstream 254395 22789319 ~ 22803854 (-) False XLOC_002752
TCONS_00005099 mRNA upstream 254409 22789333 ~ 22803740 (-) False XLOC_002752
TCONS_00005100 mRNA upstream 254820 22789744 ~ 22797959 (-) True XLOC_002752
TCONS_00005101 mRNA upstream 274791 22809715 ~ 22831611 (-) False XLOC_002753
TCONS_00005102 mRNA upstream 277519 22812443 ~ 22828371 (-) False XLOC_002753
TCONS_00005092 other downstream 258882 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 623680 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 957379 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005070 other downstream 986268 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005063 other downstream 1487377 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005097 other upstream 217308 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005104 other upstream 293442 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005129 other upstream 1842493 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 1848342 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 1920692 24455616 ~ 24455732 (-) True XLOC_002771

Expression Profile

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