RNA id: TU485071


Basic Information

Item Value
RNA id TU485071
length 350
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G422343
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6611768 ~ 6612117 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGAACATGCCTTTAATAAATGGAGACAAAAGCATGAAGGACAAAACGGAAAGGGTGACTAAACCAGAAAATAGATGCTGTGAATGCAGAGTAAGATGAGAGACCTAGGTTTGTGTGTCCTTCACAATCCTCTGCCTTCTCCCTTGGTCAAAGACAGAAACCGTTGTTGCCTGCAGTGGATGGATGAGTGTGTGAAGAGCATTGGACAGTAGCCAGGGCTGAATGTCCTCACTATGTACCTGTCCCCTCTCATCCTCTGCTTTTCCTGGGACGTCACTGCTGACATCAGTGAACTACAATCAGCCAAGATCAATCCTTTTCTTCAAATGACAACTATATACCCTCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485059 lncRNA downstream 51051 6560486 ~ 6560717 (-) True G422332
TU485058 lncRNA downstream 51759 6559787 ~ 6560009 (-) True G422331
TU485045 lncRNA downstream 92323 6510991 ~ 6519445 (-) True G422321
TU485038 lncRNA downstream 110737 6500719 ~ 6501031 (-) True G422318
TU484966 lncRNA downstream 163273 6447744 ~ 6448495 (-) True G422256
TU485081 lncRNA upstream 18461 6630578 ~ 6630875 (-) True G422353
TU485084 lncRNA upstream 19534 6631651 ~ 6633735 (-) False G422355
TU485086 lncRNA upstream 19534 6631651 ~ 6633786 (-) False G422355
TU485087 lncRNA upstream 19534 6631651 ~ 6633735 (-) True G422355
TU485090 lncRNA upstream 23716 6635833 ~ 6636140 (-) True G422357
CI01000304_06515961_06519125.mRNA mRNA downstream 92643 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06507688_06509486.mRNA mRNA downstream 102146 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06489010_06490993.mRNA mRNA downstream 119574 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 127782 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 135402 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06659869_06667425.mRNA mRNA upstream 47707 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 93953 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 113582 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 126137 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06867535_06870134.mRNA mRNA upstream 255000 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
TU484955 other downstream 128273 6477451 ~ 6479033 (-) False G422250
TU484956 other downstream 128273 6477451 ~ 6479033 (-) False G422250
TU484957 other downstream 128273 6477451 ~ 6479033 (-) False G422250
TU484958 other downstream 128273 6477451 ~ 6479033 (-) True G422250
TU484137 other downstream 1938821 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU485082 other upstream 18969 6631086 ~ 6631499 (-) True G422354
TU485117 other upstream 132562 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 1018042 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2250106 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2956239 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706

Expression Profile