RNA id: TU485092


Basic Information

Item Value
RNA id TU485092
length 223
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G422359
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6637226 ~ 6637448 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAATACAGTTTTGCAGGTAAGAATTTATGTAAAATGTCCCTTGCCAATGTATAACCAACATCAGAAATGTTTGTCGGTATTAGGAGGTGCACTTTGGACTTGGTTGAGCAAAGCTTTAATTGTTGTAGTGCAGCATATTAAATGAGAGTATTAAATGTGAGTAGCTTGTGGGCAGAGCTGCTAAGCCTGTCTTACTACTCTGCTAATTACTGTGTGTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485090 lncRNA downstream 1086 6635833 ~ 6636140 (-) True G422357
TU485086 lncRNA downstream 3440 6631651 ~ 6633786 (-) False G422355
TU485084 lncRNA downstream 3491 6631651 ~ 6633735 (-) False G422355
TU485087 lncRNA downstream 3491 6631651 ~ 6633735 (-) True G422355
TU485081 lncRNA downstream 6351 6630578 ~ 6630875 (-) True G422353
TU485111 lncRNA upstream 49480 6686928 ~ 6687167 (-) True G422373
TU485166 lncRNA upstream 269937 6907385 ~ 6970870 (-) True G422420
TU485175 lncRNA upstream 334583 6972031 ~ 6972231 (-) True G422429
TU485182 lncRNA upstream 344640 6982088 ~ 6983628 (-) True G422436
TU485183 lncRNA upstream 346247 6983695 ~ 6983943 (-) True G422437
CI01000304_06515961_06519125.mRNA mRNA downstream 118101 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06507688_06509486.mRNA mRNA downstream 127604 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06489010_06490993.mRNA mRNA downstream 145032 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 153240 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 160860 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06659869_06667425.mRNA mRNA upstream 22376 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 68622 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 88251 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 100806 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06867535_06870134.mRNA mRNA upstream 229669 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
TU485082 other downstream 5727 6631086 ~ 6631499 (-) True G422354
TU484955 other downstream 153731 6477451 ~ 6479033 (-) False G422250
TU485117 other upstream 107231 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 992711 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2224775 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2930908 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 3099298 9739353 ~ 9739471 (-) True G424168

Expression Profile