XLOC_012654


Basic Information

Item Value
gene id XLOC_012654
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 13133657 ~ 13159754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027068
GGGAAGTTAACTTTAGTGTTATCGCGCTTGCCTTATCTGATGAACACGTTATGCAGTAGCTGTAATATTGTTGGTCGTTTAATTTATGTGTGTGAGGTATCCCGCTTTGATTTTTAAATCAGCATAACTAGACACTTCTGTCATGTAGGTTCTCAACGTGCCCGGACATGCCTGACAAAAAGTGCCTTTTAAAAGGAGCATCATCACTTTCGGCAGAGTATGATTGGAGGTTTCCTGGATGCAGAGGATGATGCCTGGACATCATGACTGTGCTGGACACTGAAACTGCTGCTGCTTTTGTTGGAATGAGTCAAAATCTGTGGTTGGAGAAAGCCTGTTCTATCCTAATTCCTGATTTACCATTATGGATCATTGAATATGCATGGACTAAACGGATGATGGAGGTCTTAGAAGTTCTAGGTCCACCATTATGGCTAGAAGGAGACTGGCACCATCTGAGCCTTGAGGAGCCGTGCAGAGTCCGTGCGGTGGCAGCAGAAGTTTGGAGGATCGTGCAAACCAGAGACATCCAGCACTTTGAGAGAGTCCTTGAGTTTTTGGATGTTACATACACACTTGAACCACGACTCGTGACCCCCATCAAACACATGAAGATCAAGTTTGGTCTGCAGACACTGGTTATAATGTGGATGTTGTGGAACGATGAAAGCGCTGCTAACATCACTGTCAAGATGGAAAACTTTTTCCCAAACAAACTTCCAGAGTATTACAAATGTaGACGCAAGCATGTAGATCTGATGCAGAAAAACCAGAAAGAGTTCAAGTCCTTCGCTCATGTTCTGGCAAGAGACAGGGATATGCGGGAGACTTACATTCATGATTTAATGGAGGAGCAATATGGCGAACGCTACGCACAGAAACTGGAGGAGAGACTCTTGCACTATTTGGGAGAACTAGATAAACTTCTGCCACAACCTACATATATTGACCAGGTACTGAAGCAGCCTCATTCATATGAGAGGGGAGAGAAGATTTTGAAGAAACTGCTTTCAAAGGACAGCGCATCTCTAGCCACGGCTCTGAAAAGACTTCTACATTGCGCTGCAACAACAAATCTGGATCTTGAAGAAAGTAGCACATCCTCAGTTCCAAACACTTCTGAAGAACAAAGGGATGCTGAAGTTGAGGAACCATTACTTGGTACCCTCCATGTCATTTTAAGGCCATCACAGGACAACATGACAACGGATCCGCTCACACAAGCCAACTCAAAAGAGCTTTTTGGCTCCCAGGGCTTGTGGAAACATAAAAACTCAGAAAATATTTTACCTCAGAAGGAGATTTGTTCTGACAGAGTTACATCCACCCAGCTGTCAGGTTCTGAAACCAATGAGGATAACTTGACCCAGTCTTTTCTGGTGCAGAAAGATCTGGTTGGGAAGCACAGACTTGCGAAGACTCAAGCTGAACCGGAAATAAAGGAAGCCGAGACTGGTTTCACAGAGCAGACGTGCTCCAGACATGGTAAAAAAATGAAGAGCATTCTTCAGGAATGTTCTGAAGAGCTTGATGGAGATGCCGTACAGGTAGAATGCACTCCAACATCAACCCAAAGCACTCCACCATTTCTCCCGCACACACCTCAACCACAAGCATCTCCAAACCAGCACTCATTGTCCTCGCACCCAGATTCATCCTCTACAAACATTTCAAAGGTCAGTCGTTCACCAGTGTCCTCAACGACACCAGTTTCACCTTCACTCCTACAACAGTGCTGCTCACCATCTCAATCCACTGCCTTGGAGCAACTAGATACCTCAAGAATCAATGAAGGACCGGATTTAGCTCCCATTGTCTTTGCCGAACCTAGCAGAACCATTGAACCCAAGCTGAAACTGTCCATAGAGAGTCAAAGCTTCCTCATACAGTCCAGGTGGCTTCAACCTCAAGTGTGCCTTCACAGAATAAATAACGAAGAGTGTGCCAGACTTATGGATTCAAACGGAGCTTGTGACATTTTAGAAAAAGAACGAGAGGCTGAAGATGATGAATACATCTTATATGATGTGAATGCACTGTATTCTGATTCATACTCAGATGATTCAGACTCGACAGATTGTGATGATCCGGATTACACGCCTAGAGGTGACAAACAAAGGACATCAAAAAAGAAGTGCTAGTGAACGTGGACTTCTTAGATTTTGCACATGCGTCGGTACTCAAACATTGATTTTAGCAGTTTacattgtgcatatatttaaatTAGCTTTGCATAGGATTAAGGAACTATgcgtttttgcttgtttgttaccTCGTTGTATTACCTCATGGAGCACCCAAGATCACGTGAAACAGTTGATTGCGTTATCCACCATTGTCCTCAAAGAAACAAGATACTCCTTCACTTTTGGTTCTCTCAAACCAAAGCCTCAAAGCATTTTTGCTTGCTAAGAATCAACCCAAGACAGATTTTAAGCTGTCATTGTCTTCACCAAACCAAGCAGTATTAACAAACGCAACCTGAAACTGACTTTAAAGAGTTAAAGCTTCTTCATGTAGTCCAAGCTGCATCAACCACAAGTGAGACTTAAAAGAATGAGCAAGGAACAGCAAGCCAAATCCACAAATTCAAACAAACCCCACGACATTTTGGGAGAAAAATAGGCTGAAGACGCTTGTTATTTGATTGTGACAGTGCACTTCACTGATTCAGAATCAACAGTCTCTGAAGATCTAAAAAAAGACTAGAACAAACGACAACAAAAAGAAAGTGCCAGTGAATGTGGTCTCTATCAGTTACTCCAACATTGATTTTAGCATTTTACATTGGATGTTTAAATTTACTCTCATTAGATATGAAGAACTGTGTGCACGTCTTTTCTTAACCGCGTTGGTTTACTCCATGGAGCACACCCAAACTCTCGTTAAATCAACATTTTAATGTTGTCCATCAAGTGTGAGACTTTCTCGATGAACTCAGTGAAACAAGTTACTTCTTCACCTTTGGTGCTCCAAACGTCCTTTTACTGACCTCAGTCCACAACTTTAAAGCAACTTTGCACTCCAAAAATCAACTCAGATTGTAGTTATTGTCATCTTCACCAAACTGAGCAGATCCAACAAACCCAAACTGAAACTGTCCTCGGAGAGTTAATTCTTACTCATGCAGTCCAAGTGGATACTAAACCGACTAAACAGTCATCCTCCTCATCACAGTTCACAGTCTCAAAGCAAATGACACATGATCAAATCAATGCAGAACATATTTTAGATGGTTAACAAACcaaacagattattattattattaaattattattaattagatcATGAACAATCAGTAACTGTCTTATAGTCTATGGCATTTTAGAAAGACAACAAGGGGTAGTAGATGATCACTACACAATGTTTACTTCACAGCAAATCAAACATTCTGTCATTTTCTTTATCATCACCATTGTGTTATGTCAAACACCAAAGAAATGTGTCCATATTTGcgacacaaatgaaaatatttttcatgaaataatgcctaaaaacaattattcatttataagtattttccattactgggttgcagctggaagggcattcactgtgtaaaacatatgctggataagttgacggttcattcctctgtggtgaaccctgatgaataaagggactaagccagaggaaaatgaatgaatgaatgaatgaatgacttataagtatatataaaatgAACAGAAGCTCAAGTGCTTGAGTCTTGAGAACAAGTCTCATTGGCTCCCGATGCTAACGTGACACACAAGTATGAACCTCATTGGTTCTTGCGCATCAGGCAAGCATGATTGTTCTTCCATGACTAAATTTAAATGCTCTACACATTGGCTgattctcaatatgcgttcttcagtggtcttgcgtccttgtgttctcgtgtaacatcaTTATCAACCACCAAAGTTCAGTTCcgatactcaagaccgcaagaacagaggacgcgtgaaacttccctgatgtgttcttgatatcgaggacgcatggctgcagacttgagcaccaaacttgctctagaagtcttagaagtcattgcgactggaggtgggaagcgcagcattttatatacgtttattattaaagttcagagatatcacttatttacctcaggagtttccctaattGAAACCGTGAATATAAACATGACCATGAAATTCTTAAAGAAAACAACACATTAAGggtatttaattattcataataaaatccgttttatttattttgtgcaagGGATATTTGTAAATTCTTTATGTAGAGTAtagggggaaaacaataaatcgttgtatgagtgctgtaatgtttaaataatttttttttaaaaactcgtgaaggtcatgtgaccatcatgaagaatgcagcatctcatttttcTGTTCTCgcagtctcccgagttcgttcttccgaggacaactggcaagaccggtctttacgagaacgcaagtccgttctctgcattcttggaattgagaaacagccattgtttgATGATCtctttgttttaaaacatatcttTGAGAGGAGAATGAGACCTCTCTTCATTTGATcagaaatatcttaatttgtcttTCGAAGATTATTTTCTTACGGGTGTTCAAGTTGTTGGGAACTTGCCCTTGAATgtaaacatactgtattttaattcTGATGACCTGGATTAGAGACTAAAAACACAAATGTCGAGCAGAAATGCCAGTAAACGTGGTGTTTGTCATGTTTTTAAGTTGCATAAGTACTCTGATATCGATTTAAGCAATCGGATGTTTAAATAAACTCGCATTATTTTTACCTCAGGAAGGTCAAACTCCTTGCCTTAAAGCACATGAGAGTAAATGTCAAAATATTTgtgtcctgtatattttttttttgtaatcagtCATTACAAAACATGCATGTTGTTCAGAAGGTCTTATGACGCGCGGGTATAACTCTAAACGGTTTCTAATGGGGAAGGCTGTGCGCTGTTGGTTTAGTGATGCTTATGGTGGGTCAGGGTTATCACTGGGCCTCTGGATGGTGTGTTTTAGCAGATACATGTTGACATGCCTTAATTGACCTGGAAGGGTTATGTAAGGACAGACGTTTTGTATTATGGTGAGTTTTTTACAATGCCACGGTTGCATTGACCCTACCATCAGTTTAGTACATCAGGCCAGATAAGTGTTTTAAGATTACTCTTAGACTCTCTTATTTGGGATTGTGTGTACGTGTTgggtttttttaaataagtttttatgccaagtaacaaaaaaaaaaaaaaaaaaaaagaaagacttgTGGGTTTGAAGTTCAAGGTTATTCCCAGGTAAAAGTTTCCAGTCTGACGTTTGTTTACCTGACTTTAGTGTAAACTTGATTGCAAATTTCTTGGTCATTATTGCATCAGATATTGTTCTCGTGTGCATGTTGTGTCTAATTTATACAGTAATTGGAGGTGTTTTTAATGATTGTTTGAAAGAATTAATACTGCCAAGTTGCagatatttcttatttatttttgaacCAGGTGACATTTTATTAAAGGCATGTTTCATGCGAAATT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027068 True 5536 lncRNA 0.40 7 13133657 13159754

Neighbor

gene id symbol gene type direction distance location
XLOC_012653 GAN coding upstream 30890 13077800 ~ 13102767 (+)
XLOC_012652 NA coding upstream 191637 12941800 ~ 12942020 (+)
XLOC_012651 tbxas1 coding upstream 299334 12655766 ~ 12834323 (+)
XLOC_012650 NA coding upstream 479012 12580449 ~ 12654645 (+)
XLOC_012649 NA coding upstream 671147 12452154 ~ 12462510 (+)
XLOC_012655 tat coding downstream 2974 13162728 ~ 13179510 (+)
XLOC_012656 zgc:56622 coding downstream 22774 13182528 ~ 13194362 (+)
XLOC_012657 cotl1 coding downstream 44077 13203831 ~ 13216672 (+)
XLOC_012658 plcg2 coding downstream 75960 13235714 ~ 13293642 (+)
XLOC_012659 si:ch211-260p9.3 coding downstream 141014 13300768 ~ 13307257 (+)
XLOC_012648 NA non-coding upstream 770831 12360479 ~ 12362826 (+)
XLOC_012645 NA non-coding upstream 1100175 12030408 ~ 12033482 (+)
XLOC_012662 NA non-coding downstream 334486 13494240 ~ 13515308 (+)
XLOC_012664 BX649568.1 non-coding downstream 789056 13948810 ~ 13948924 (+)
XLOC_012665 NA non-coding downstream 1074615 14234369 ~ 14239459 (+)
XLOC_012675 BX649610.2 non-coding downstream 1829325 14989079 ~ 14996705 (+)
XLOC_012680 NA non-coding downstream 2272952 15432706 ~ 15440860 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_08090811_08094235 NA coding CI01000013 null 8089673 ~ 8094304 (-)