G429300


Basic Information

Item Value
gene id G429300
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17820760 ~ 17821223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU492915
TGTAAGACTTGATTTTCCTGCTAAGACAAAAACTGAGATCAAGCACCCTGCAATAAAGCAATAAAGCTTATCTGGAGAGAAGATCTCAAAGAAATAGCATAGGACAATGCCTTGCCCTCACACATCTACAGGAGGCAATAGCCCTCCCCCCAAAACACACACACCCTCCTTCCTTTCCCCCTGACTCAAGTCACTGAAAGTTCTCCAAGAAGTATAATGTATCTGGTGTATCTATTGTTTATTCCTTTCATGTTCGGTATCATTTTAAATGTCTCAGTGCGATTGGTAAAATGGTCTCAATTTCACAGCAGTCACTGGTATTATGAAGAAGATTAAAAACTAAGGAGAATTCTGTCCTCCTTTTGGGTGGTGTCACTTGTGAAAACCCACTCCTCTCCCCCCAAAACAGGTGTTGGTGTAATAAAAATTTACAATCCTTTTGTTCTGGTCTTGGTATATAAGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU492915 True 464 lncRNA 0.40 1 17820760 17821223

Neighbor

gene id symbol gene type direction distance location
CI01000304_17776984_17798369 NA coding downstream 22391 17776913 ~ 17798369 (-)
CI01000304_17761838_17774880 PHF12A coding downstream 45880 17761550 ~ 17774880 (-)
CI01000304_17753888_17759116 DHRS13A.1 coding downstream 61644 17753723 ~ 17759116 (-)
CI01000304_17748958_17752035 DHRS13A.2 coding downstream 68725 17748386 ~ 17752035 (-)
CI01000304_17722987_17728462 PLEKHB1 coding downstream 92195 17721207 ~ 17728565 (-)
CI01000304_17837247_17882808 MYO18AA coding upstream 16024 17837247 ~ 17883960 (-)
CI01000304_18007357_18007779 NA coding upstream 185832 18007055 ~ 18008022 (-)
CI01000304_18010568_18011800 NA coding upstream 189031 18010254 ~ 18011834 (-)
CI01000304_18018841_18019759 NA coding upstream 197618 18018841 ~ 18020494 (-)
CI01000304_18021327_18022049 NA coding upstream 199828 18021051 ~ 18022109 (-)
G429224 NA non-coding downstream 26313 17718946 ~ 17794447 (-)
G429202 NA non-coding downstream 116617 17659874 ~ 17704143 (-)
G429220 NA non-coding downstream 251943 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 256362 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 291049 17529318 ~ 17529711 (-)
G429301 NA non-coding upstream 936 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 4219 17825442 ~ 17825664 (-)
G429305 NA non-coding upstream 6778 17828001 ~ 17828552 (-)
G429316 NA non-coding upstream 78443 17899666 ~ 17899895 (-)
G429321 NA non-coding upstream 94368 17915591 ~ 17915894 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 953522 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 1039801 16769417 ~ 16780398 (-)
G427376 NA other downstream 2559355 15258964 ~ 15261405 (-)
G427423 NA other downstream 3458868 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3533156 14286960 ~ 14294449 (-)
G429331 NA other upstream 102640 17923863 ~ 17924684 (-)
G429499 NA other upstream 416496 18237719 ~ 18238319 (-)
G429673 NA other upstream 765219 18586442 ~ 18591856 (-)

Expression


Co-expression Network