RNA id: TU492915


Basic Information

Item Value
RNA id TU492915
length 464
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G429300
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17820760 ~ 17821223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAAGACTTGATTTTCCTGCTAAGACAAAAACTGAGATCAAGCACCCTGCAATAAAGCAATAAAGCTTATCTGGAGAGAAGATCTCAAAGAAATAGCATAGGACAATGCCTTGCCCTCACACATCTACAGGAGGCAATAGCCCTCCCCCCAAAACACACACACCCTCCTTCCTTTCCCCCTGACTCAAGTCACTGAAAGTTCTCCAAGAAGTATAATGTATCTGGTGTATCTATTGTTTATTCCTTTCATGTTCGGTATCATTTTAAATGTCTCAGTGCGATTGGTAAAATGGTCTCAATTTCACAGCAGTCACTGGTATTATGAAGAAGATTAAAAACTAAGGAGAATTCTGTCCTCCTTTTGGGTGGTGTCACTTGTGAAAACCCACTCCTCTCCCCCCAAAACAGGTGTTGGTGTAATAAAAATTTACAATCCTTTTGTTCTGGTCTTGGTATATAAGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492831 lncRNA downstream 26313 17718946 ~ 17794447 (-) True G429224
TU492809 lncRNA downstream 116617 17659874 ~ 17704143 (-) True G429202
TU492827 lncRNA downstream 251943 17565702 ~ 17568817 (-) True G429220
TU492845 lncRNA downstream 256362 17564100 ~ 17564398 (-) True G429238
TU492823 lncRNA downstream 291049 17529318 ~ 17529711 (-) True G429216
TU492916 lncRNA upstream 936 17822159 ~ 17822403 (-) True G429301
TU492918 lncRNA upstream 4219 17825442 ~ 17825664 (-) True G429303
TU492920 lncRNA upstream 6778 17828001 ~ 17828552 (-) True G429305
TU492931 lncRNA upstream 78443 17899666 ~ 17899895 (-) True G429316
TU492936 lncRNA upstream 94368 17915591 ~ 17915894 (-) True G429321
CI01000304_17776984_17798369.mRNA mRNA downstream 22391 17776913 ~ 17798369 (-) True CI01000304_17776984_17798369
CI01000304_17761838_17774880.mRNA mRNA downstream 45880 17761550 ~ 17774880 (-) True CI01000304_17761838_17774880
CI01000304_17753888_17759116.mRNA mRNA downstream 61644 17753723 ~ 17759116 (-) True CI01000304_17753888_17759116
CI01000304_17748958_17752035.mRNA mRNA downstream 68725 17748386 ~ 17752035 (-) True CI01000304_17748958_17752035
CI01000304_17722987_17728462.mRNA mRNA downstream 92195 17721207 ~ 17728565 (-) True CI01000304_17722987_17728462
CI01000304_17837247_17882808.mRNA mRNA upstream 16024 17837247 ~ 17883960 (-) True CI01000304_17837247_17882808
CI01000304_18007357_18007779.mRNA mRNA upstream 185832 18007055 ~ 18008022 (-) True CI01000304_18007357_18007779
CI01000304_18010568_18011800.mRNA mRNA upstream 189031 18010254 ~ 18011834 (-) True CI01000304_18010568_18011800
CI01000304_18018841_18019759.mRNA mRNA upstream 197618 18018841 ~ 18020494 (-) True CI01000304_18018841_18019759
CI01000304_18021327_18022049.mRNA mRNA upstream 199828 18021051 ~ 18022109 (-) True CI01000304_18021327_18022049
TU492202 other downstream 953522 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1039801 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2559355 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3458868 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3533156 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 102640 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 416496 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 765219 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 768103 18589326 ~ 18591856 (-) True G429673

Expression Profile