RNA id: TU492920


Basic Information

Item Value
RNA id TU492920
length 552
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G429305
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17828001 ~ 17828552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCTTCAGAATATTATTACTATGATACTGTTGTAATGTTCATCTTGTACGCCGATGGTTTTGTACATTGTAATGGACTTTTATTTTTTTATAAGATTTTAAATGTCCATGGACCCTTTTGATGGACTGTTTCCACAGTTATCTAGCAAAGTTTTTAATATTTCTTTTTTTTTTATTGCACATTTATAACACTATTGTCACAGACACGCCAGGCTCCAACACCCACCAATCACAGCGCACTCCATCTCTGGAATACTGATCACACGCACCTGCACCTCATCAGCACGCTCATCACCTCCACTACTAAAGACACTCACACACACTCACTCACTGTCCGGTCTCGTTCGCATCTAGACATACCTACATGCTTACCTCAAGGACTCCCAGTGATCTACTTCCCTGTCTCCAGCGTCTCCAAATCTCTCCTCGTGTTCCCAGTCTGTGTGTGAGTGTCTCCAGTCATCTGCGTTGTTCATCCTCCATCGTCTTCCCGGATCTCCATCTATTCAACACAAAGGACAGTATCATTCACCCTCATCTCACCATTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492918 lncRNA downstream 2337 17825442 ~ 17825664 (-) True G429303
TU492916 lncRNA downstream 5598 17822159 ~ 17822403 (-) True G429301
TU492915 lncRNA downstream 6778 17820760 ~ 17821223 (-) True G429300
TU492831 lncRNA downstream 33554 17718946 ~ 17794447 (-) True G429224
TU492809 lncRNA downstream 123858 17659874 ~ 17704143 (-) True G429202
TU492931 lncRNA upstream 71114 17899666 ~ 17899895 (-) True G429316
TU492936 lncRNA upstream 87039 17915591 ~ 17915894 (-) True G429321
TU492937 lncRNA upstream 87359 17915911 ~ 17916117 (-) True G429322
TU493003 lncRNA upstream 150377 17978929 ~ 17979236 (-) True G429382
TU493014 lncRNA upstream 166900 17995452 ~ 17997271 (-) True G429391
CI01000304_17776984_17798369.mRNA mRNA downstream 29632 17776913 ~ 17798369 (-) True CI01000304_17776984_17798369
CI01000304_17761838_17774880.mRNA mRNA downstream 53121 17761550 ~ 17774880 (-) True CI01000304_17761838_17774880
CI01000304_17753888_17759116.mRNA mRNA downstream 68885 17753723 ~ 17759116 (-) True CI01000304_17753888_17759116
CI01000304_17748958_17752035.mRNA mRNA downstream 75966 17748386 ~ 17752035 (-) True CI01000304_17748958_17752035
CI01000304_17722987_17728462.mRNA mRNA downstream 99436 17721207 ~ 17728565 (-) True CI01000304_17722987_17728462
CI01000304_17837247_17882808.mRNA mRNA upstream 8695 17837247 ~ 17883960 (-) True CI01000304_17837247_17882808
CI01000304_18007357_18007779.mRNA mRNA upstream 178503 18007055 ~ 18008022 (-) True CI01000304_18007357_18007779
CI01000304_18010568_18011800.mRNA mRNA upstream 181702 18010254 ~ 18011834 (-) True CI01000304_18010568_18011800
CI01000304_18018841_18019759.mRNA mRNA upstream 190289 18018841 ~ 18020494 (-) True CI01000304_18018841_18019759
CI01000304_18021327_18022049.mRNA mRNA upstream 192499 18021051 ~ 18022109 (-) True CI01000304_18021327_18022049
TU492202 other downstream 960763 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1047042 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2566596 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3466109 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3540397 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 95311 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 409167 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 757890 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 760774 18589326 ~ 18591856 (-) True G429673

Expression Profile