CI01000306_03070842_03073585 (GATA1A)


Basic Information

Item Value
gene id CI01000306_03070842_03073585
gene name GATA1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3070578 ~ 3073634 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03070842_03073585.mRNA
ATAATTCTACCAAAACTGTTGTCTGAACATTATTTCTCCCACTTGAAAGATGGAGAACTCATCTGAGCAGTCTCGTTGGGTGTCCCCCAGCCTGACCAGTCCCGACCTATTAGCAAACTACACCACAGAGCCTGGTTTACTGCCACCCGGTGAAGATGATGAGCCCTTCTACTCCAGCTCTGAGGCTGACTTACTCCCGTCTTATTATTCCAGTAATGCCCAGAGCCGAGCCTCGTCATCTTACAGACACAGTCCAGTTCGCCAAGTCTACTCCTCTCCATCTATTCTGGGAAACATCCAGTGGCTGGACAACTCTGCAGGTCACTCTCTAAACTCTTCCTATAACCCCACTTCCACTGTCTGGGCAAGCAGCCCATTCACAAAGACGCCTCTCCACCCTCACACCTCCACGTCCATCTACCCGAACAGTGCGACCCCATCTTTCACATCCCCCAAAGAGGGTTTCCCTTCCCCGAGTCGTGACGGGAAGGAAAGTCCCAGGCTCCAGGAAGTCCTGAAAGCCGAGCGCCTGAGTCCCATGGGTGGAGGGGGAAGCAGCTTTCTCAATCTGAGTTCAGCTGCTGGAGGTGTGTATGGTCCTTCCCCACACATGCTGAGTCCATACGGATCGTACATGACCACGTCACAGGACTATAGTTCAGCGGCACTCTATTCCAGCGCTGGACCCTGGATGAGCCCTTCGTCATACTCACCCAAACTTCGCAACAAGATGAGACTTTCGCCACCAGAGGCTCGTGAATGTGTAAATTGTGGTGCCACTGCCACCCCTCTGTGGCGTCGAGATGGGACGGGCCACTACCTCTGTAATGCTTGTGGACTGTACCATAAGATGAATGGCCAGAACAGACCCCTCATCAGACCAAAAAAGAGGCTGATTGTCAGCAAACGCGCTGGAACGCAGTGCGCCAACTGCCACACAAGCACTACAACACTATGGAGACGCAATGCCAGCGGCGAGCCTGTGTGCAACGCCTGCGGCCTCTATTTTAAACTGCACAACGTCAACAGACCCTTAACTATGAAGAAGGATGGCATACAGACACGGAATCGCAAGGTGTCTAACAGAAACAAGAAGGGCAAAAAGAGCGCAGTGTCAGAGGTTTACCCCGACATGTCTCATCTCGCACCTCCCGATGAGCACGTTGGACCCTATTCTCTGAACCCAGGACCTCTTCTGTCTTATAGCCACACCCCTCATTTATTGCCCCCTTCCACCTTGCACTCCTCTCCCACTTTGCCCTACAGCCACCATCCAAACTCTGGCATGGTGCCCACACTTGTGTGAAGGAAATGTGTACTGGACCGTGAGGCATGAACGCATCACATCACATTTTTAAATTAAGAGAAAATGTGTAAAAGCAACTCCATAACAGTGGAAGTCTTGTCAGTGATTTTGAACCAGTTATGTAGTTTGAATACTGGAACAGTAAAACTTGGTAGCTGAAACTATCACCTATATCATACGACAAATGTAAATATTTATGATTTTAGGCCTTATTGTATGTGCTATAATCATGCTATTATGACTTCTTTTGAGACGTTCAATAAA

Function

symbol description
gata1a Enables DNA-binding transcription factor activity; double-stranded DNA binding activity; and sequence-specific DNA binding activity. Acts upstream of or within several processes, including hemopoiesis; regulation of gene expression; and regulation of myeloid cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including ball; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; X-linked recessive disease (multiple); bone marrow cancer (multiple); colon adenocarcinoma; and myeloid leukemia associated with Down Syndrome. Orthologous to human GATA1 (GATA binding protein 1).

GO:

id name namespace
GO:0030225 macrophage differentiation biological_process

KEGG:

id description
K09182 GATA1; GATA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03070842_03073585.mRNA True 1570 mRNA 0.50 5 3070578 3073634

Neighbor

gene id symbol gene type direction distance location
CI01000306_03044394_03045362 NA coding downstream 24373 3043376 ~ 3046205 (-)
CI01000306_03006241_03009198 NA coding downstream 61222 3006190 ~ 3009356 (-)
CI01000306_02966994_02968675 SNAI1A coding downstream 101392 2965937 ~ 2969186 (-)
CI01000306_02919027_02938762 MYH7B, MYH7BA, MYH7BB coding downstream 131816 2918888 ~ 2938762 (-)
CI01000306_02601172_02604783 OLFML3B, OLFML3 coding downstream 465795 2601000 ~ 2604783 (-)
CI01000306_03086600_03106758 HCFC1B, HCFC1A, HCFC1 coding upstream 12876 3086510 ~ 3108215 (-)
CI01000306_03258305_03268722 BRPF3A coding upstream 183589 3257223 ~ 3268722 (-)
CI01000306_03278833_03292888 PLCH2B coding upstream 205199 3278833 ~ 3292888 (-)
CI01000306_03296768_03330783 SKIA, SKIB, SKI coding upstream 222089 3295723 ~ 3330783 (-)
CI01000306_03334185_03336292 NA coding upstream 260198 3333832 ~ 3336292 (-)
G432051 NA non-coding downstream 114234 2952249 ~ 2956344 (-)
G432032 NA non-coding downstream 188845 2876373 ~ 2881733 (-)
G432196 NA non-coding downstream 311819 2758459 ~ 2758759 (-)
G432173 NA non-coding downstream 326727 2743133 ~ 2743851 (-)
G432153 NA non-coding downstream 328305 2740941 ~ 2742273 (-)
G432280 NA non-coding upstream 49843 3123477 ~ 3125954 (-)
G432285 NA non-coding upstream 63651 3137285 ~ 3137732 (-)
G432282 NA non-coding upstream 65157 3138791 ~ 3139881 (-)
G432281 NA non-coding upstream 75306 3148940 ~ 3152959 (-)
G432308 NA non-coding upstream 157877 3231511 ~ 3277198 (-)
G432022 NA other downstream 66687 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1321628 1717933 ~ 1726043 (-)
G431814 NA other downstream 1758144 1311702 ~ 1312434 (-)
G431706 NA other downstream 1907240 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2586929 482482 ~ 494090 (-)
CI01000306_04544349_04545034 NA other upstream 1469089 4542723 ~ 4545244 (-)
G433450 NA other upstream 2288009 5361643 ~ 5383763 (-)
G433670 NA other upstream 2967380 6041014 ~ 6041283 (-)
G433985 NA other upstream 3122473 6196107 ~ 6197210 (-)
G434016 NA other upstream 3281546 6355180 ~ 6361643 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location