CI01000306_03278833_03292888 (PLCH2B)


Basic Information

Item Value
gene id CI01000306_03278833_03292888
gene name PLCH2B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3278833 ~ 3292888 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03278833_03292888.mRNA
ATGAACACATCTCCAGGAATGGCACCATCATCTCCATCCTTGTTTTCACCATCTCTAACCCGGCGGCCCGCGAGTCCTGGGAGGAGGCCGCCTTCACCTTTCCGCTCGCCCTCTCCTTCTATAATGACTTCACCTAAACTATGGCAGAAAGCTGCGATATCACGTCTGGCTGAGGAGTTCTTCTGGATAGGAGGAAGTATTGTTGCATCGCCAAAATGGAGAATGGGCCAGATAGTGGAGAGATGCATGTGCAACATGCAGGCTGGCTCTCAAATGATTAAATTGAGAGGAAAATCCAAGGCTCTGGTGCGCCTTTTCTACCTAGATGAGCACAAGTCCTGCATCCGCTGGAGGCCCTCCAGAAAACACGAGAAAGCTAAAATCACCATAGACTCTATCCATGAGGTCTGTGAGGGGATGAGAACTGAGGTCTTCAGGCGATTTGCCAGCAATAACTTTGATCCAAACTGCTGCTTCAGTATTTACCATGGAGACCATGTGGAATCTCTTGACTTGGTTTCCACAAATGGAGAAGAGGCACGGACCTGGATCACTGGCCTTAAATACCTCCTGGCAGGCATCAGTGACGAGGACAGTCTGGCAAAAAGACAACGGACACGAGATCAATATCCTTTTAATTGTAGTGGATATTTCCTTACATCTTGTTGCAAATGGTTGAAACAGACCTTTTCAGAAGCAGACAAAAATGGAGATGGGAATCTGAGCATTGGAGAGGTTCTACAGCTGCTCCACAAGCTCAATGTGAACCTTCCAAAGCAGAAAGTCAGAGAAATGTTCCAGGAGGCCGACACTGATGAAAACCAGGGGTCATTGACGTTTGAGGAATTCTGTACCTTTTACAAGCTGATCTCGACACGCCGAGATCTTTACTTACTAATGATCACCTACAGTAACCACAAAGAGCACATGGACATGGTAAATGTGACTAAAGACTACTGCAAGATGATAATTAACCAGTTTGAGCCGTGTTCTGACAACCAAACACAAATGCTGCTGGGTATTGATGGTTTCACCAACTACATGCGTAGTCCTGCAGGGGACATCTTCAACCCAGAACACTATCAAGTAAATCAGGACATGACACAGCCACTGACAAATTACTACATCGCATCTTCTCACAACACCTACCTGACTGGAGATCAGCTGCTGTCTCAGTCTCGGGTTGATATGTATGCATATGTGCTTCAGGCGGGCTGTCGCTGTGTGGAAGTTGACTGCTGGGATGGTCCTGATGGGGAACCTATTGTGCATCACGGTTACACACTTACCTCAAAAATCCTCTTTAAAGATGTTGTTGAGACAATCAACAAATATGCATTTGCCAAAACTCAATACCCAGTGATCCTTTCTATAGAGAACCACTGCACTGTGCCTCAGCAGAAGAAAATGGCTCAATACCTCATGGACGTTCTACAGGACAAGCTGGACCTGTCAAATATAAATGTGAATGAGTCCAGGCGTCTGCCATCTCCAGAGGTTTTGAAAGGGAAAGTACTTGTCAAGGGAAAGAAGCTGCCAGCAAACATTGATGCTGATGCAGAAGAAGGGGATGTGTCTGATGAAGACAGCGGTGAAGAGGAGGAGGAGGAAGAGGAGCAAATTAATGGAGATACCACAGAAGGAGCACCAGAGACAGGTGATGAATCAAAGAAACGCTCACGGAGGTCGTTCATGGGCAGCTTCAGGCGCAAGAAGAAAAAACGTGTGAAATTAAAAAAGAAGCCCATCCTGAGTGACTCTGATACTGAGCTGGAAACCCCAAGCGGTAATGATAAACAGGTCATCGACTATGGCAAACGGAGGAAAACAATGAGACTTTCTCGCGCCCTCTCTGATCTCGTTAAATACACAAAGTCGGTGCGTGTTCATGATATAGAAACTCAAGCATACATGTGCAGCTGGCAAGTCTCCTCCTTAAACGAGAGTATAACTAACCAGATTCTGCAGCTAAAACCTGCTCAGTTAGTTCGCTTCAATCAACGGCAACTCTTAAGAGTCTACCCCTCCAACTTCCGTGTCGATTCGAGCAACTTCAATCCTCAGCCTTTTTGGAATGCAGGATGTCATTTAGTTGCTCTCAACTATCAAACAGAAGGCCGTATGCTACAGCTGAACAGGGCAAAATTTGCAGCAAATGGAAACTGCGGCTATGTGCTGAAGCCAAAATGCATGTGTAAAGGTGCCTTTAATCCTACGCTGGAAGACCCTTTGCCGGGACACAGGAAATCTCAGCTAGTGCTCAAGATAATTAGTGGCCAGCAGCTACCGAAGCCAAAAGACTCCATGTTAGGGGACAGAGGAGAGATCATAGATCCCTTTGTGGAAGTGGAGATAATTGGATTGCCTATTGATTGTAATAAACAGCAGACAAGAGTAGTAGATGACAATGGTTTTAACCCCATGTGGGAGGAAACACTAGTGTTTACGCTACACATGCCTCAGATTGCCTTAGTGCGCTTTATGGTTTGGGATCATGATCCAATTGGAAGAGACTTCATTGGACAGAGAACCATAGCATTTAAAAGCATGATGCCAGGATATCGGCATGTCTATTTAGAAGGTATGGAAGAAGCATCTATCTTTGTGCATGTTGCCATTAATGACATCACAGGAAAGGTCAAATCAAGCAACGCAGTAAAGCAGCTAATCCAGAAAAACCTTATGCAGACCTCTCAAGATGGCACAAGGACATCTTTCGGTGCAAACTTCCTGCGTAAAAGTGGAGCTGGAAAGAACCAAGCAAAAGTCGTGAAGGTCTCAGCCGACCGCTACAGCAAAGAGGACTTTCTGAACAGACGTTACAGTGATGACGTGAGCTCGAAGGACAGCAGGAGCACCTCACAGTCTGCGTCGTTGCTCAGAGGAGCTCAGAGTGAACCCCTGAAAAGGGCCCATAAGGTCTGTTTTCAGGAGCCGGAAGGATCTCATGAGGCACGGCGCCGCCTGTCCTCTATCACATGCTCTGGTGGAGCAGCAGTGGCTGTGGACTTTACCAACTTAGCATTTGATTCAACAAACAGTTCAGAACTGGACATTCAGACTTCTGAGGCTCAATCACACATTGCTGATAACAAGGAGTTGAGTTTTTCAAAACGAAATGAATTATCTCCAACATCTAAACAGGAGTGCGAGTCTACAGACTTACCGGTACCTAAGACGAAGGATCCTGCTTCTACACTGAATGAGCGACTCTTGTCGAAGCATATCTCAGGTGCTAAATCTGATATTGAGGATTCAGTGCAGGAACCTGGGATGTGTAAACTTCAAGAGAGCCATCTAAAAATTCAGTCAGAACCTACACAAGAGTGTGAACCCTTGAATTTCTATCCAATACCTGTTGGAGTACTAGATCCTTCTAGTGGAACATTAAACACCAGAAGCCTGGTGATCAAGAATAAATTCAGAACTTCTTTAGATGGCAGGCTTAACCCTCAGTGGCAACCAATGTCAATCCCCGCAACCCCTGCGCTGAGCAGACGCATGAATGACCCAGGCACACCATCTTCCAAAGATTCGCCATTTACAGGACGCAGATCACAAAGCGTCCCAAGACGCCGTCCGCCCTCTCCGCCAAACACATCTGGTCACATTAAGAAAGAATTTCTCAACCAATACCCTCTCCCACAGTGCAGTTACTCTGCACCAAAAAACCCTGCTCCTAATAATCACAACCTTGCTGACAGTGAATCAAGCAGCCTAAGTAGTTTGGACAGCCTTGACCTGAGTACTCTGCCATCCCGTTTCCCTGACAACCAGCAGCAGACAATGGGCACATTGCAGAGGGAAATGAATGCTCTGTTTGAGCAGAAAATGCGTGAGATTCACTGCCATTCACCACTGTTTTTCAGAG
>TU496485
AGATGGTAAATGTGACTAAAGACTACTGCAAGATGATAATTAACCAGTTTGAGCCGTGTTCTGACAACCAAACACAAATGCTGCTGGGTATTGATGGTTTCACCAACTACATGCGTAGTCCTGCAGGGGACATCTTCAACCCAGAACACTATCAAGTAAATCAGGACATGACACAGCCACTGACAAATTACTACATCGCATCTTCTCACA
>TU496489
AGCTGCGATATCACGTCTGGCTGAGGAGTTCTTCTGGATAGGAGGAAGTATTGTTGCATCGCCAAAATGGAGAATGGGCCAGATAGTGGAGAGATGCATGTGCAACATGCAGGCTGGCTCTCAAATGATTAAATTGAGAGGAAAATCCAAGGCTCTGGTGCGCCTTTTCTACCTAGATGAGCACAAGTCCTGCATCCGCTGGAGGCCCTCCAGAAAACACGAG

Function

symbol description
plch2b Predicted to enable calcium ion binding activity and phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Orthologous to human PLCH2 (phospholipase C eta 2).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03278833_03292888.mRNA False 3871 mRNA 0.46 20 3278833 3292888
TU496485 False 210 lncRNA 0.42 2 3285736 3286029
TU496489 True 223 lncRNA 0.50 2 3290108 3292739

Neighbor

gene id symbol gene type direction distance location
CI01000306_03258305_03268722 BRPF3A coding downstream 10111 3257223 ~ 3268722 (-)
CI01000306_03086600_03106758 HCFC1B, HCFC1A, HCFC1 coding downstream 170618 3086510 ~ 3108215 (-)
CI01000306_03070842_03073585 GATA1A coding downstream 205199 3070578 ~ 3073634 (-)
CI01000306_03044394_03045362 NA coding downstream 232628 3043376 ~ 3046205 (-)
CI01000306_03006241_03009198 NA coding downstream 269477 3006190 ~ 3009356 (-)
CI01000306_03296768_03330783 SKIA, SKIB, SKI coding upstream 2835 3295723 ~ 3330783 (-)
CI01000306_03334185_03336292 NA coding upstream 40944 3333832 ~ 3336292 (-)
CI01000306_03357647_03435533 KAZN, KAZNB coding upstream 64759 3357647 ~ 3435533 (-)
CI01000306_03477332_03500721 NA coding upstream 184372 3477260 ~ 3500897 (-)
CI01000306_03520303_03535138 PRDM2B, PRDM2 coding upstream 227224 3520112 ~ 3535138 (-)
G432308 NA non-coding downstream 1635 3231511 ~ 3277198 (-)
G432281 NA non-coding downstream 125874 3148940 ~ 3152959 (-)
G432282 NA non-coding downstream 138952 3138791 ~ 3139881 (-)
G432285 NA non-coding downstream 141101 3137285 ~ 3137732 (-)
G432280 NA non-coding downstream 152879 3123477 ~ 3125954 (-)
G432406 NA non-coding upstream 245614 3538502 ~ 3538723 (-)
G432411 NA non-coding upstream 380060 3672948 ~ 3673510 (-)
G432415 NA non-coding upstream 387931 3680819 ~ 3681256 (-)
G432416 NA non-coding upstream 390085 3682973 ~ 3683834 (-)
G432445 NA non-coding upstream 448619 3741507 ~ 3742163 (-)
G432022 NA other downstream 274942 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1529883 1717933 ~ 1726043 (-)
G431814 NA other downstream 1966399 1311702 ~ 1312434 (-)
G431706 NA other downstream 2115495 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2795184 482482 ~ 494090 (-)
CI01000306_04544349_04545034 NA other upstream 1249835 4542723 ~ 4545244 (-)
G433450 NA other upstream 2068755 5361643 ~ 5383763 (-)
G433670 NA other upstream 2748126 6041014 ~ 6041283 (-)
G433985 NA other upstream 2903219 6196107 ~ 6197210 (-)
G434016 NA other upstream 3062292 6355180 ~ 6361643 (-)
G432370 NA non-coding downstream 954 3284499 ~ 3284782 (-)

Expression


Co-expression Network