CI01000306_09017460_09019520 (PSMA5)


Basic Information

Item Value
gene id CI01000306_09017460_09019520
gene name PSMA5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9017002 ~ 9019869 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09017460_09019520.mRNA
AGGTCTCTGAGGGTTTTTAAAAGTGCACAGATGAAAATAAATACGCTGGGAGTATTTCTAAAGAGCTCACAACATATAAATGACTTGGTTGAAATAAAACATGCCTTGTCATTGAGTGAATAGTAGTTCGTCCAATCAAATAGATAGTTGACTCTTAGTCCCGCCTTTCATCTTAAAATCGTCCAATCAGTGGAAGGGATGCCGGTGTCTGATTGGTTATGAACTCCAATGCCAACATCCCGCCGCTAACAAAGCGAGCTGTTTTGCGCTAACTCACTTCAGTTAAAGTTAGAAAATACAGGTCTGTTTTAACATTTTCGTATTGACTTTTATAGATTTGCATTTCAAAATGTTCCTGACAAGATCCGAATATGACAGAGGAGTAAACACTTTCTCACCAGAGGGAAGGCTTTTTCAAGTAGAATATGCTATTGAAGCCATTAAATTGGGGTCCACAGCCATTGGCATCCAGACATCGGAGGGAGTGTGTCTCGCTGTGGAGAAGAGAATAACCTCTCCTCTGATGGAGCCCAGCAGCATTGAAAAGATTGTAGAGATCGACACTCATATTGGCTGTGCCATGAGTGGCTTAATAGCTGATGCAAAAACGCTTATCGACAAAGCAAGAGTGGAAACACAGAACCATTGGTTTACCTACAATGAGACAATGACAGTGGAGAGCGTAACGCAGGCCGTGTCTAACCTCGCTCTGCAGTTTGGAGAGGAGGACGCTGACCCTGGCGCTATGAGTCGTCCTTTTGGGGTCGCTCTGCTTTTCGGAGGTGTGGATGAGAAAGGACCTCAGCTGTAAGTACTCTTTTTGCTTTTAGTATATTTAGCTGGGTAAATGTGCAGTAGTTTGTTTCAGTAGATATTAAAAAACACATTTATACAAATTGCACTGGTTTGTTTTATTTTTCATTGTTTTACCCTGCTTGGACATTCCAAGAAATGAGGGATATATGAATAATTGGAATAAAGCAGAAATTGCAATATGGCTTAGTGCAGTTTTCAAGCTGTGATTTAATTATTTAAGTATATGTGCTGCATATTTCAGAGTGAATCATGGCACTGTTCTTTTATAACAGTAATAATAATAGTTATTAGTTACACTGATATAATCACAGAATTTTTTTATTTTTGGCCACATTGTGCAGTTCTTTGGCGGAGTTTTATTGCATTTTAATTTGCAATCACAATAGTTATCTTCATAAACAGAATTCGATTTTTTTTTTTTTTCCCCCTTGCATTGTGCAGTTCTACAATAAA

Function

symbol description
psma5 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

GO: NA

KEGG:

id description
K02729 PSMA5; 20S proteasome subunit alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09017460_09019520.mRNA True 1269 mRNA 0.39 6 9017002 9019869

Neighbor

gene id symbol gene type direction distance location
CI01000306_09013366_09014513 PSMA5 coding downstream 2489 9013071 ~ 9014513 (-)
CI01000306_08986353_09011689 SORT1A coding downstream 4877 8985405 ~ 9012125 (-)
CI01000306_08977329_08982584 NFYA coding downstream 33658 8977282 ~ 8983344 (-)
CI01000306_08953503_08960561 RRP9 coding downstream 56220 8953040 ~ 8960782 (-)
CI01000306_08950728_08950975 NA coding downstream 66027 8950629 ~ 8950975 (-)
CI01000306_09054500_09064951 NA coding upstream 34300 9054169 ~ 9064951 (-)
CI01000306_09067901_09077320 USP48 coding upstream 47366 9067235 ~ 9078013 (-)
CI01000306_09290422_09292579 NA coding upstream 270235 9290104 ~ 9292819 (-)
CI01000306_09309973_09348444 CACNA2D3 coding upstream 290104 9309973 ~ 9348444 (-)
CI01000306_09374084_09380300 NA coding upstream 353418 9373287 ~ 9380506 (-)
G436308 NA non-coding downstream 43524 8973028 ~ 8973478 (-)
G436319 NA non-coding downstream 46380 8965702 ~ 8970622 (-)
G436386 NA non-coding downstream 93222 8923570 ~ 8923780 (-)
G436383 NA non-coding downstream 95062 8921614 ~ 8921940 (-)
CI01000306_08864809_08865809 BRK1, BRK1.S, BRK1.L non-coding downstream 151159 8864794 ~ 8866213 (-)
G436405 NA non-coding upstream 70261 9090130 ~ 9090826 (-)
G436311 NA non-coding upstream 78603 9098472 ~ 9103121 (-)
G436413 NA non-coding upstream 96905 9116774 ~ 9117062 (-)
G436415 NA non-coding upstream 100758 9120627 ~ 9120991 (-)
G436426 NA non-coding upstream 184190 9204059 ~ 9251009 (-)
G434338 NA other downstream 2150066 6866656 ~ 6866936 (-)
G434086 NA other downstream 2564751 6437406 ~ 6452251 (-)
G434016 NA other downstream 2655359 6355180 ~ 6361643 (-)
G433985 NA other downstream 2819792 6196107 ~ 6197210 (-)
G433670 NA other downstream 2975719 6041014 ~ 6041283 (-)
G436446 NA other upstream 636410 9656279 ~ 9671776 (-)
G436626 NA other upstream 815156 9835025 ~ 9836323 (-)
G436643 NA other upstream 1002279 10022148 ~ 10025375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G38097 psma5 non-coding NC_053115.1 CM020912.1 13342319 ~ 13347346 (-)
bowfin (Amia calva) AMCG00013991 psma5,LOC107685984,LOC107736674 misc CM030125.1 CM030125.1 48817983 ~ 48821156 (-)
tiger barb (Puntius tetrazona) G40670 ythdc2 non-coding NC_056703.1 CM032072.1 30564117 ~ 30564377 (-)