XLOC_012783 (arpin)


Basic Information

Item Value
gene id XLOC_012783
gene name arpin
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21071023 ~ 21076006 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025509
AAATCATCGACTGAAGATGAGTCGTATTTATGACAACACTGCGTTGTTAAACAAACCTGTGCACAACGAGAAACTATCCTTCACGTGGGATCCAATAGTTCACCAGAGTGGTCATGGGGTGATTTTAGAAGGGACGGTTGTGGACTTTTCACGCCATGCCATAACAGATGTGAAAAACAGAAAGgaGCGTTATAATGTTTTGTACATCAAACCAAGCCGTGTCCATCGCAGAAAATATGATTCAAAAGGAAACGAAATTGAACCTAATTTCAGTGATACCAAGAAGGTCAACACAGGTTTTCTGATGTCCTCCTACAaaGTAGAAGCTAAAGGTGAAACAGATTGTCTAGATGAGCGCCAGCTTCGTGAAATTGTGAATAAGGAGCAGCTGGTTAAAGTAACCATAAAACATTGTCCTCGTGAGGCCTTTGCTTTCTGGATCTCAGAGGCGGAGATGGACAAAACAGAGCTTGAGCCCGGCCAAGAAGTCCGCCTTAAAACGAAAGGAGATGGGCCATTCATATTTTCCTTCGCCAAATTGGACAGCGGCACAGTAACAAAATGCAACTTTGCTGGAGATGAAAACGCCGGGGCATCGTGGACAGAGAAAATAATGGCAAACAAATCCAACCAGGAAAATACAGGGAAAAGTGCCGCTCAGGGTGAGGGAGCGGACGATGATGAATGGGATGACTGAACAACACCCTTGAGCTTCCAGGACTGCATCACAGTGCCTTTTCTGTGTATTTACACCACACAGTCAGTATTCCTATATTAGCATGtggaaatattacaaataaacagcaaaagtgcCATTTTATAATAGCAACTTGTATGCATTAAGTATTTTATATATGTACAGcgggtaaaataagtattgaacacatcatgatttcttctgttaaatatatttctgaaggagctgttgacatgaaattgacccagattttggtaaaagcccaaacatacaaataaaccaaaacaaaaaagcctgaaaaaaa

Function

symbol description
arpin Involved in directional locomotion. Acts upstream of or within negative regulation of cell migration. Predicted to be located in lamellipodium. Is expressed in intestinal bulb. Orthologous to several human genes including ARPIN (actin related protein 2/3 complex inhibitor).

GO:

id name namespace
GO:0051126 negative regulation of actin nucleation biological_process
GO:0033058 directional locomotion biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0042995 cell projection cellular_component
GO:0030027 lamellipodium cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-304 Involved in directional locomotion. Acts upstream of or within negative regulation of cell migration. Predicted to be located in lamellipodium. Is expressed in intestinal bulb. Orthologous to several human genes including ARPIN (actin related protein 2/3 complex inhibitor).

Ensembl:

ensembl_id ENSDARG00000041085

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025509 True 1001 mRNA 0.41 6 21071023 21076006

Neighbor

gene id symbol gene type direction distance location
XLOC_012782 fam169b coding upstream 7644 21061216 ~ 21063379 (+)
XLOC_012781 BX548061.1 coding upstream 47422 21021699 ~ 21023601 (+)
XLOC_012780 pgpep1l coding upstream 195026 20869923 ~ 20875997 (+)
XLOC_012779 ttc23 coding upstream 217275 20825375 ~ 20853748 (+)
XLOC_012778 cftr coding upstream 348213 20677090 ~ 20722810 (+)
XLOC_012784 kmt5b coding downstream 37210 21113216 ~ 21120218 (+)
XLOC_012785 chka coding downstream 46812 21122818 ~ 21145374 (+)
XLOC_012786 NA coding downstream 87418 21163424 ~ 21169748 (+)
XLOC_012787 BX571884.1 coding downstream 115659 21191665 ~ 21191784 (+)
XLOC_012788 hydin coding downstream 197743 21273749 ~ 21401401 (+)
XLOC_012772 NA non-coding upstream 694088 20328119 ~ 20376935 (+)
XLOC_012771 NA non-coding upstream 745802 20316443 ~ 20325221 (+)
XLOC_012769 BX890624.2 non-coding upstream 862894 20089381 ~ 20208129 (+)
XLOC_012759 NA non-coding upstream 1450070 19524841 ~ 19620953 (+)
XLOC_012790 NA non-coding downstream 393630 21469636 ~ 21473364 (+)
XLOC_012792 CT573204.1 non-coding downstream 1002138 22078144 ~ 22081753 (+)
XLOC_012793 NA non-coding downstream 1023613 22099619 ~ 22100228 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03585420_03587386 ARPIN coding CI01000013 null 3585252 ~ 3587386 (-)