Gene
RNA
| Item | Value |
|---|---|
| gene id | G432061 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 2409106 ~ 2410385 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU496129 | True | 1110 | lncRNA | 0.50 | 2 | 2409106 | 2410385 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_02393665_02395203 | NA | coding | downstream | 13884 | 2393598 ~ 2395222 (-) |
| CI01000306_02311430_02312497 | SOX12 | coding | downstream | 96442 | 2310592 ~ 2312664 (-) |
| CI01000306_02244385_02249335 | TRIB3 | coding | downstream | 159771 | 2243388 ~ 2249335 (-) |
| CI01000306_02130408_02134817 | ATP6AP1L, ATP6AP1LA | coding | downstream | 274289 | 2129809 ~ 2134817 (-) |
| CI01000306_02123270_02125888 | PDE12 | coding | downstream | 283091 | 2122716 ~ 2126015 (-) |
| CI01000306_02443217_02444650 | NA | coding | upstream | 32616 | 2443001 ~ 2445093 (-) |
| CI01000306_02455495_02470846 | NA | coding | upstream | 44603 | 2454988 ~ 2470846 (-) |
| CI01000306_02485219_02510419 | PLEKHG5A | coding | upstream | 74746 | 2485131 ~ 2510419 (-) |
| CI01000306_02601172_02604783 | OLFML3B, OLFML3 | coding | upstream | 190615 | 2601000 ~ 2604783 (-) |
| CI01000306_02919027_02938762 | MYH7B, MYH7BA, MYH7BB | coding | upstream | 508503 | 2918888 ~ 2938762 (-) |
| G432085 | NA | non-coding | downstream | 23808 | 2384876 ~ 2385298 (-) |
| G432083 | NA | non-coding | downstream | 25958 | 2382937 ~ 2383148 (-) |
| G432075 | NA | non-coding | downstream | 56157 | 2352667 ~ 2352949 (-) |
| G432004 | NA | non-coding | downstream | 115031 | 2293504 ~ 2294075 (-) |
| G431719 | NA | non-coding | downstream | 121346 | 2235019 ~ 2287760 (-) |
| G432117 | NA | non-coding | upstream | 146275 | 2556660 ~ 2556905 (-) |
| G432122 | NA | non-coding | upstream | 158600 | 2568985 ~ 2569706 (-) |
| G432126 | NA | non-coding | upstream | 164336 | 2574721 ~ 2591522 (-) |
| G432145 | NA | non-coding | upstream | 229657 | 2640042 ~ 2643811 (-) |
| G432161 | NA | non-coding | upstream | 278073 | 2688458 ~ 2691958 (-) |
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | downstream | 660156 | 1717933 ~ 1726043 (-) |
| G431814 | NA | other | downstream | 1096672 | 1311702 ~ 1312434 (-) |
| G431706 | NA | other | downstream | 1245768 | 1163027 ~ 1163338 (-) |
| CI01000306_00482506_00494090 | PFKLB, PFKL | other | downstream | 1925457 | 482482 ~ 494090 (-) |
| G432022 | NA | other | upstream | 589851 | 3000236 ~ 3003891 (-) |
| CI01000306_04544349_04545034 | NA | other | upstream | 2132338 | 4542723 ~ 4545244 (-) |
| G433450 | NA | other | upstream | 2951258 | 5361643 ~ 5383763 (-) |
| G433670 | NA | other | upstream | 3630629 | 6041014 ~ 6041283 (-) |
| G433985 | NA | other | upstream | 3785722 | 6196107 ~ 6197210 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
