CI01000310_01663192_01666886


Basic Information

Item Value
gene id CI01000310_01663192_01666886
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1663192 ~ 1667160 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01663192_01666886.mRNA
ATGGGAATGCCGGTGTATGGCTTCAGTGATGAGGACTGCTCAGGCTACAACCGTCTCGGCATGGAAAGTGACTTCGAGGACCCGCGAGACACAGAGAGCGAGCGGGAGGAGATGGGCCCCGACGCCGCGTTCGCACCATACCTCTCCTGCAGGCAGTGCGGCCAGCTGCTCGGCGACCCCCTGAGCGGGGCGCTGGATCTCGCAGGTCTGTACTGCCTCCAGTGCGGAGCCGAGGGTGGAGATGCTGACCGCCAGGACAGACCATTAGAGGAAGCCCACCCGGCCGACAGCGTGCAAGGGAGGATAAACCGAGGCAGATCCACGTCCGATGGAAGCGCTTGTAAAACATACTCGTGCAAACTGTGCAGTTTCAGCTCACGTTACTCTAATCACTTGAAGCGGCACATGAAAACACACAACGGCGAGAAACCGTACCAGTGCCAGCACTGCTCATATGCCTCCGCCCAGCTGGTGAACCTGCAGAGGCACGTGCGCACACACACGGGCGAGAAGCCATACAAATGCGAGTTCTGCACATTTGCATGCAACTCTCTGGGTAACCTGAAGAGACACCAGCGCATGCACACGCAGGAGAAAGACCTCAACTGCAGCGAGTGCGATTTCCGTGCAAACAACAGCCACTCTTTAAAGAAACACATGATGAGCCACAAGGAGGACAAATCTACAGCCTTAACGGAAGAGTCGGTGGTGTCTGACCTCACTCTCCACATCAGCAATGACTCTGACTTCCTCCAAAGCTATGACACCCTACGAACGGACCGCCATCCTCCCTCCCTGCTGCACACTGAGGGTTTGGCCAAAGAGTCGGACCCTCTGCCTGAGCTGCTATTTCCCTTCACGTGCCGTGTGTGCGGCGTGGTACTGGAGGACGAGGAGGGCGCGACGGCGCAAATCTGCAGCAAATGCACATTAGACATGTTGTCCAAAAGCTCCCCCACTAGCCCGGAGAAAAGCGACAAGCTGTACTCATGCACGTCATGTCCATTCGTCACACAGTACCCCAACCATCTCGCCCGCCACATGAAGACTCACAGCGGCGAGAAGCCCTACAAGTGCCCGCAGTGCAATTACGCGTCCGCCCACTTCGACAACCTCAAGCGGCACCACCGCGTGCACACGGGCGAGAAGCCGTACAAATGCCGCGTGTGCGACTACGCTTGCGGCAACTTGGCGAATCTGAAGCGGCACGAGCGCATCCACTCAGGTGCCAAGCCGTTCCAGTGCAGCGTGTGCAGTTACAGCTGCAACCAGAGCATGAACCTGAAACGCCACATGCTGCGGCACACCGGCGAGAAGCCCTTTAAGTGCCAGGAGTGCGGCTACACCACAGGCCACTGGGACAATTACAAACGCCACCAAAAGAAGCACGGCCACTCCGCCGAAGGGTGGCTCAAGATGCAGCTACCAGAGAAAGAGGATGAGGATGAGGAAGGAGAAATGTAGTGAGATCTCTCTATTGATGTCTAACTCCAGTTGCCTTATTTTTATCTGAGGAATCCATGCTGTAACAGTGCGTCACGACATGGCCGGTTTGCTGTTTTTTTTTGTTTTGTTTTTGTTGTTTTTTTTTCACATGGAATTTGATTGTATTTTGTATTTTGTCCAAGTGTTTACAGCAGCTGATCACAGAATCACAGGTTTGCTATTTAAGGCTGTCATCTCAATCTCAAAGAGCACATTTATGCACCACTGGGTGAATTTCACAAAAACACCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01663192_01666886.mRNA True 1738 mRNA 0.54 2 1663192 1667160

Neighbor

gene id symbol gene type direction distance location
CI01000310_01638700_01644396 FNDC4B coding upstream 18594 1638700 ~ 1644598 (+)
CI01000310_01588365_01597469 NA coding upstream 65706 1586492 ~ 1597486 (+)
CI01000310_01564875_01571307 TDH coding upstream 91164 1564875 ~ 1572028 (+)
CI01000310_01513690_01517791 NA coding upstream 144963 1513690 ~ 1518229 (+)
CI01000310_01508712_01511125 FAM167A coding upstream 152067 1508341 ~ 1513341 (+)
CI01000310_01674884_01675180 NA coding downstream 7084 1674244 ~ 1675265 (+)
CI01000310_01693209_01696414 NA coding downstream 25569 1692729 ~ 1696871 (+)
CI01000310_01723036_01723254 NA coding downstream 55876 1723036 ~ 1723550 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding downstream 70475 1737635 ~ 1745687 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding downstream 147815 1814975 ~ 1815656 (+)
G439741 NA non-coding upstream 11805 1651012 ~ 1651387 (+)
G439723 NA non-coding upstream 58123 1604851 ~ 1605069 (+)
G439721 NA non-coding upstream 59085 1603897 ~ 1604107 (+)
G439704 NA non-coding upstream 100638 1562321 ~ 1562554 (+)
G439679 NA non-coding upstream 139366 1522738 ~ 1523826 (+)
G439697 NA non-coding downstream 3722 1670882 ~ 1673466 (+)
G439759 NA non-coding downstream 94232 1761392 ~ 1770560 (+)
G439776 NA non-coding downstream 107187 1774347 ~ 1778832 (+)
G439764 NA non-coding downstream 151733 1818893 ~ 1819259 (+)
G439760 NA non-coding downstream 153205 1820365 ~ 1822265 (+)
CI01000310_01207513_01226750 CDC5L other upstream 423787 1207057 ~ 1227194 (+)
G439115 NA other upstream 972000 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1013639 648566 ~ 650159 (+)
G439845 NA other downstream 244441 1911601 ~ 1912417 (+)
G440505 NA other downstream 1432257 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G666876 LOC106571014 non-coding NC_048572.1 CM023226.2 3873165 ~ 3875130 (-)
eurasian perch (Perca fluviatilis) G185320 znf513,LOC102795572 non-coding NC_053129.1 CM020926.1 18137725 ~ 18140207 (-)