G666876 (LOC106571014)


Basic Information

Item Value
gene id G666876
gene name LOC106571014
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3873165 ~ 3875130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU759399
agaggggggggttgAGGAAGATATAAGCTATGGAGGATGAAGTGGAGACTATAGAGGAGATGGAATAGCAGACTGGTTAGAGGAGATGGAATAGCAGACTGGTTAGAGGAGactatagaggaGATGGAATAGCAGACTGGTTAGAGGAGTTGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTAAGTGGAGACTATAGAGGAGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTTAGAGGAGATGGAATAGCAGACTGGTTAGAGGAGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGAGATGCATACCTAGTTAATAGAACAACTGAAATGTGGGTTGTAAGGCATAATGTAAATGAAGTTAGGATATATACGGCACTGTTGGTATGCGTTGGGGGGGGGAAAGAACAGCATATGGTGGACAATGCAGGCGGCATTTAGTTACGGACGTTAAAGTAGAACCCTCATCCCAGTCCATTCATCTGGCAACACAGCAGCAACCGTCCTTCACCCTCCTTTCTGTCCAAAAGGCATCAAACATGTCCACTAATAATCACCATGTTCTAGAATTGTGCATGATTCTAATCAAACATGTCCACTAATAATCACCATGTTCTAGAATTGTGCATGATTCTAATCAAACATGTCCACTAATAATCACCATGTTCTAGAATTGTGCATGATTCTACATAGCAGCTGCAGAGAAATCattgacaaaaacaacaaacaaaaaaatctagGATTTTGCTGGTAGTTTTAGCTGTCATTTCCCATGTTCTGTGGTACAGCTCTGTTCCTCTCCTATCTGGACATATACTGCATCACCGcctcttcctctttcctctgCGGCTGTCCCGCCACCctttcttcctcatcctcttcctcaccccCCTCTTCCTCACCCCCGCCGGACATCTGAACTTTGACCCAGCCGTCGGTGGCGAGGCCATGTTTCTTCTGGTGTCGTTTGTAGTTGTCCCAGTGTCCCGTGGTGTATCCACACTGCTGGCActtataaggcttctctcccgtgtgtctCAGCATGTGTCTCTTCAGATTCATACTCTGGTTACAGCTGTAGCTACACACCGCGCACTGGAACGGCTTGGCGCCCGAGTGGACCCGCTGGTGACGTTTTAAGTTAGCCAGGTTCCCACAGGCGTAGTCACACAGGTGGCACTTGTACGGCTTCTCGCCCGTGTGCACGCGGTGATGGCGTTTCAGGTTGTCGAAGTGGGCGGAGGCGTAGTCGCACTGAGGGCACTTGTACGGCTTCTCTCCGCTGTGTGTCTTCATGTGTCGCGCCAGGTGGTTGGGGTAGTGGGTGAGGAAGGGACAGGCACTGCAGGTGTAGACCTTGTCCCCACGCTCTCCGGGGCTGTTGGGGCCAGACGACTCCTTGGTCAGCATGTCCAGGGTGCATTTGGCACAGATCTGTGCAGTGGAACCGTCCTCGTCCTCCAGGGGGGTACCACAGAGACGACAGGTAAAGGGGAAtagcagaggaaggagagagtctctgtgtgtctcctctgACTTCACTCCCACCACAGGTCTGACTCCAGACCTAGACCCAGTCAAACACCTTCCTAAAGTCCCAGCCCCGACCCTAGCCCCAAGTCCAGGCCCCTCAAGAAGTCTTGGGGGCTGTTGCTCCAGTGGTGGTTGTAACCTTAGTCTGCTGTAGCGTGGCAGG

Function

NR:

description
zinc finger protein 513-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU759399 True 1914 lncRNA 0.50 2 3873165 3875130

Neighbor

gene id symbol gene type direction distance location
LOC118965483 LOC100692480 coding downstream 49848 3713777 ~ 3823317 (-)
ccm2 ccm2 coding downstream 752721 3081212 ~ 3120444 (-)
LOC110529255 rps12 coding downstream 915890 2947015 ~ 2957275 (-)
LOC118965659 NA coding downstream 916464 2956624 ~ 2956701 (-)
LOC110529239 LOC105018054 coding downstream 1594728 2233985 ~ 2278437 (-)
LOC110529264 LOC106571015 coding upstream 4703 3879833 ~ 3959350 (-)
LOC110529266 LOC106571016 coding upstream 102202 3977332 ~ 3990108 (-)
baalcb LOC106571017 coding upstream 162486 4037616 ~ 4047801 (-)
LOC110529162 ptk2b coding upstream 404875 4279536 ~ 4358156 (-)
LOC110529271 ei2bb coding upstream 707417 4582547 ~ 4590496 (-)
G666875 NA non-coding downstream 1116 3871819 ~ 3872049 (-)
G666874 NA non-coding downstream 1896 3870977 ~ 3871269 (-)
G666853 NA non-coding downstream 44449 3828436 ~ 3828716 (-)
G666852 NA non-coding downstream 45147 3827765 ~ 3828018 (-)
G666850 NA non-coding downstream 48483 3823904 ~ 3824682 (-)
G666847 NA non-coding upstream 2512 3877642 ~ 3878351 (-)
G666849 NA non-coding upstream 4007 3879137 ~ 3879576 (-)
G666889 NA non-coding upstream 48974 3924104 ~ 3926211 (-)
G666890 NA non-coding upstream 49249 3924379 ~ 3928491 (-)
G666900 NA non-coding upstream 68742 3943872 ~ 3944864 (-)
G665927 NA other downstream 203018 3668232 ~ 3670147 (-)
G665797 NA other downstream 351542 3520790 ~ 3521623 (-)
G665718 NA other downstream 454877 3417113 ~ 3418288 (-)
G665655 NA other downstream 532205 3340056 ~ 3340960 (-)
G665603 NA other downstream 633113 3236888 ~ 3240052 (-)
G667122 NA other upstream 613676 4488806 ~ 4490220 (-)
znf395b LOC106571047 other upstream 1673673 5535756 ~ 5551550 (-)
G668192 NA other upstream 2331428 6206558 ~ 6284021 (-)
G668238 NA other upstream 2405066 6280196 ~ 6281640 (-)
wdr21 dcaf4 other upstream 2911402 6786377 ~ 6801903 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_01663192_01666886 NA coding CI01000310 null 1663192 ~ 1667160 (+)