RNA id: TU759399


Basic Information

Item Value
RNA id TU759399
length 1914
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G666876
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3873165 ~ 3875130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggggggggttgAGGAAGATATAAGCTATGGAGGATGAAGTGGAGACTATAGAGGAGATGGAATAGCAGACTGGTTAGAGGAGATGGAATAGCAGACTGGTTAGAGGAGactatagaggaGATGGAATAGCAGACTGGTTAGAGGAGTTGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTAAGTGGAGACTATAGAGGAGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTTAGAGGAGATGGAATAGCAGACTGGTTAGAGGAGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGACTGGTtagaggagactatagaggaGATGGAATAGCAGAGATGCATACCTAGTTAATAGAACAACTGAAATGTGGGTTGTAAGGCATAATGTAAATGAAGTTAGGATATATACGGCACTGTTGGTATGCGTTGGGGGGGGGAAAGAACAGCATATGGTGGACAATGCAGGCGGCATTTAGTTACGGACGTTAAAGTAGAACCCTCATCCCAGTCCATTCATCTGGCAACACAGCAGCAACCGTCCTTCACCCTCCTTTCTGTCCAAAAGGCATCAAACATGTCCACTAATAATCACCATGTTCTAGAATTGTGCATGATTCTAATCAAACATGTCCACTAATAATCACCATGTTCTAGAATTGTGCATGATTCTAATCAAACATGTCCACTAATAATCACCATGTTCTAGAATTGTGCATGATTCTACATAGCAGCTGCAGAGAAATCattgacaaaaacaacaaacaaaaaaatctagGATTTTGCTGGTAGTTTTAGCTGTCATTTCCCATGTTCTGTGGTACAGCTCTGTTCCTCTCCTATCTGGACATATACTGCATCACCGcctcttcctctttcctctgCGGCTGTCCCGCCACCctttcttcctcatcctcttcctcaccccCCTCTTCCTCACCCCCGCCGGACATCTGAACTTTGACCCAGCCGTCGGTGGCGAGGCCATGTTTCTTCTGGTGTCGTTTGTAGTTGTCCCAGTGTCCCGTGGTGTATCCACACTGCTGGCActtataaggcttctctcccgtgtgtctCAGCATGTGTCTCTTCAGATTCATACTCTGGTTACAGCTGTAGCTACACACCGCGCACTGGAACGGCTTGGCGCCCGAGTGGACCCGCTGGTGACGTTTTAAGTTAGCCAGGTTCCCACAGGCGTAGTCACACAGGTGGCACTTGTACGGCTTCTCGCCCGTGTGCACGCGGTGATGGCGTTTCAGGTTGTCGAAGTGGGCGGAGGCGTAGTCGCACTGAGGGCACTTGTACGGCTTCTCTCCGCTGTGTGTCTTCATGTGTCGCGCCAGGTGGTTGGGGTAGTGGGTGAGGAAGGGACAGGCACTGCAGGTGTAGACCTTGTCCCCACGCTCTCCGGGGCTGTTGGGGCCAGACGACTCCTTGGTCAGCATGTCCAGGGTGCATTTGGCACAGATCTGTGCAGTGGAACCGTCCTCGTCCTCCAGGGGGGTACCACAGAGACGACAGGTAAAGGGGAAtagcagaggaaggagagagtctctgtgtgtctcctctgACTTCACTCCCACCACAGGTCTGACTCCAGACCTAGACCCAGTCAAACACCTTCCTAAAGTCCCAGCCCCGACCCTAGCCCCAAGTCCAGGCCCCTCAAGAAGTCTTGGGGGCTGTTGCTCCAGTGGTGGTTGTAACCTTAGTCTGCTGTAGCGTGGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU759397 lncRNA downstream 1116 3871819 ~ 3872049 (-) True G666875
TU759396 lncRNA downstream 1896 3870977 ~ 3871269 (-) True G666874
TU759371 lncRNA downstream 44449 3828436 ~ 3828716 (-) True G666853
TU759370 lncRNA downstream 45147 3827765 ~ 3828018 (-) True G666852
TU759368 lncRNA downstream 48483 3823904 ~ 3824682 (-) True G666850
TU759365 lncRNA upstream 2512 3877642 ~ 3878351 (-) True G666847
TU759367 lncRNA upstream 4007 3879137 ~ 3879576 (-) True G666849
TU759416 lncRNA upstream 48974 3924104 ~ 3926211 (-) True G666889
TU759418 lncRNA upstream 49249 3924379 ~ 3925801 (-) False G666890
TU759419 lncRNA upstream 49249 3924379 ~ 3928491 (-) True G666890
XM_036984577.1 mRNA downstream 49848 3713777 ~ 3823317 (-) False LOC118965483
XM_036984578.1 mRNA downstream 49848 3713777 ~ 3823317 (-) True LOC118965483
XM_036984568.1 mRNA downstream 752721 3081212 ~ 3120444 (-) True ccm2
XM_036984569.1 mRNA downstream 769819 3081212 ~ 3103346 (-) False ccm2
XR_005053038.1 mRNA downstream 916464 2956624 ~ 2956701 (-) True LOC118965659
XM_036984580.1 mRNA upstream 4703 3879833 ~ 3959350 (-) False LOC110529264
XM_036984582.1 mRNA upstream 4703 3879833 ~ 3959350 (-) False LOC110529264
XM_036984583.1 mRNA upstream 4703 3879833 ~ 3959350 (-) True LOC110529264
XM_036984585.1 mRNA upstream 102202 3977332 ~ 3990108 (-) True LOC110529266
XM_036984586.1 mRNA upstream 162486 4037616 ~ 4047801 (-) True baalcb
TU758186 other downstream 203018 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 351542 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 454877 3417113 ~ 3418288 (-) True G665718
TU757859 other downstream 532205 3340056 ~ 3340960 (-) True G665655
TU757795 other downstream 633113 3236888 ~ 3240052 (-) True G665603
TU759716 other upstream 613676 4488806 ~ 4490220 (-) True G667122
TU760267 other upstream 1673673 5548803 ~ 5551245 (-) True znf395b
TU761008 other upstream 2331428 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 2405066 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 2911402 6786532 ~ 6794187 (-) True wdr21

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_01663192_01666886.mRNA True 1738 mRNA 0.54 2 CI01000310 1663192 ~ 1667160 (+)