RNA id: XM_036984569.1


Basic Information

Item Value
RNA id XM_036984569.1
length 1551
RNA type mRNA
GC content 0.56
exon number 10
gene id ccm2
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3081212 ~ 3120444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTGACTAGACTATCTCCGTCAGACACCGCCCAGTAAGTGCctcaaacagacacagacaacaggcagagagacacaaaCAACAGCTCCTCTTTCATTGAGGCTAAATGGAGACTGAGCCGGGTATCGTGTCTCCCTTCAAGCGTGTGTTTCTGAAGGGAGAAAAGGGTAGAGATAAAAAGGCTCAGGAGAAGACTACAGAACGCCGTGCCCTCCacaccttctccctctccctccccgaCCACCGCATCGACCCTGACATCCTGCTCAATGACTACGTAGAGAAGGAAGTCAAgTACTTGGGCCAGCTGACGTCAGTACCAGGATACCTGAACCCCTCCAGTCGAACAGAGGTGCTACAGCTCATTGACAATGCCAGGAAGTCCCACCAGTTGGCGGGTCAGCTTACTTCGGAGCAGGATGCAGTGGTCAGTCTGTCCGCCTATAATGTGAAGCTGGTGTGGCGGGATggagaggacatcatactgcgtGTTCCCATCCACGACATCGCTGCCGTGGCATACATACGAGACGACTCACTGCACCTGGTGGTGCTCAAGACAGcCCAGGAGGCAGGTGTGTCCCCGTGCCCCAGTACCTGTCCTGACCTGTCTAAGTCCCAGACCCTCAGCTCTCTGTCTGAGAGCGGGGCTGTACTGGTAGAGGTCTGCTGTCTGCTAGTACTGGCTGTAGACAACAAGACAGCAGCAGAGGAGCTGTGTCTGCTACTCAGCCAGGTGTTTCAGATAGTTTATACTGAGTCCACTATAGACTTCCTGGACAGAGCCATCTTTGACGGAGCCACCACCCCCAccagacacctctctctctacagtgACGACTCGTCAAGCAAGGTGGACCTTAAGGAATCATTCGAAGCAGAGGCCAGCACCTTTTCTTTCCAGGGTTCTCTAGAGGCAGGGGGCGACTCTCCGTCCCCCACCTCCACCCCAGCCTCCCCTCAGACCAAGACAGCCAGCGAAGGAGAGCTGAGCACCACCGCCACAGAGCTTCTACAAGACTACATGACCACGTTGCGTACCAAGTTGTCGTCTCAGGAGATCCAGCAGTTTGCTACTCTTCTTCATGAGTACCGTAACGGAGCGTCCGTCCATGAGTTCTGTATCAACCTTCGCCAGCTCTACGGGGACAGCAGGAAGTTCCTCCTACTGGGTCTGAGGCCGTTCATCCCAGAGAAGGACAGCCAACACTTTGAGAACTTCCTGGAGACCATCGGTGTTAAGGACGGTCGTGGCATCATCACTGACAGCTTCGGACGCTACCGCCGCACCGCCAGCTCCGCCTCCGACTCAACCACCAATGGGAACGGGGCGGTGGGAGGGGACGGGGGTGGGTCTGACGAAGGGCTTGTGCCCTCCGAAGGAGACGAATGGGACCGTATGATCTCTGATATCAGTAATGATATAGAGGCTCTGGGTGTCAGTATGGACCAAGAAGGGGTCACACCCTAGCCTCTAACCCCTTGCCTCGAGTCTGGGTTGCAGTATGGACCAAGAGGGGATGACACCCTACCCCCCTAGACCCTACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU757732 lncRNA downstream 11990 3069018 ~ 3069222 (-) True G665554
TU757730 lncRNA downstream 14762 3066217 ~ 3066450 (-) True G665552
TU757712 lncRNA downstream 54391 3026547 ~ 3026821 (-) True G665536
TU757703 lncRNA downstream 61087 3018308 ~ 3020125 (-) True G665531
TU757690 lncRNA downstream 76405 3004500 ~ 3004807 (-) True G665523
TU757743 lncRNA upstream 1254 3104600 ~ 3105533 (-) True G665561
TU757756 lncRNA upstream 25784 3129130 ~ 3130936 (-) False G665574
TU757757 lncRNA upstream 25784 3129130 ~ 3130936 (-) False G665574
TU757759 lncRNA upstream 25784 3129130 ~ 3130936 (-) True G665574
TU757815 lncRNA upstream 144607 3247953 ~ 3248217 (-) True G665619
XM_036984571.1 mRNA downstream 123937 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA downstream 124511 2956624 ~ 2956701 (-) True LOC118965659
XM_036984555.1 mRNA downstream 802775 2233985 ~ 2278437 (-) True LOC110529239
XM_036984548.1 mRNA downstream 880305 2110060 ~ 2200907 (-) False LOC110531067
XM_036984549.1 mRNA downstream 880305 2110060 ~ 2200907 (-) False LOC110531067
XM_036984577.1 mRNA upstream 610431 3713777 ~ 3823317 (-) False LOC118965483
XM_036984578.1 mRNA upstream 610431 3713777 ~ 3823317 (-) True LOC118965483
XM_036984580.1 mRNA upstream 776487 3879833 ~ 3959350 (-) False LOC110529264
XM_036984582.1 mRNA upstream 776487 3879833 ~ 3959350 (-) False LOC110529264
XM_036984583.1 mRNA upstream 776487 3879833 ~ 3959350 (-) True LOC110529264
TU756738 other downstream 730231 2291402 ~ 2350981 (-) True G664763
TU756703 other downstream 1086682 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 1582641 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 1642771 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 2650954 428191 ~ 430258 (-) True G663235
TU757795 other upstream 133542 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 236710 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 313767 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 417444 3520790 ~ 3521623 (-) True G665797
TU758186 other upstream 564886 3668232 ~ 3670147 (-) True G665927

Expression Profile