RNA id: TU757756


Basic Information

Item Value
RNA id TU757756
length 499
lncRNA type intronic
GC content 0.38
exon number 4
gene id G665574
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3129130 ~ 3130936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgttattactgttggagctagaaacacaagcatttagctaggtattactgttggagctagaaacacaagcatttagttagttatcactgttggagctagaaacacaaacatttagctaggtattactgtactgttggagctagaaacacaagcatttagttaggtattactgttggagctagaaacacaagcctttaactaggtattactgttggagctagaaacacaagcatttagttcgATATTACTgttctgttggagctagaaacacaagcctttaactaggtattactgtactgttggagctagaaacacaagcatttagctaggtattactgtactgttggagctagaaacacaagcatttagctaggtattactgtactgttggagctagaaacacaagcatttagctaggtattactgttggagctagaaacacaagccaTTTGATACACCTGCGATaccatctgcaaatctgtgtacgtgaccaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU757743 lncRNA downstream 23597 3104600 ~ 3105533 (-) True G665561
TU757736 lncRNA downstream 38420 3089688 ~ 3090710 (-) True G665558
TU757735 lncRNA downstream 40655 3087549 ~ 3088475 (-) True G665557
TU757732 lncRNA downstream 59908 3069018 ~ 3069222 (-) True G665554
TU757730 lncRNA downstream 62680 3066217 ~ 3066450 (-) True G665552
TU757815 lncRNA upstream 117017 3247953 ~ 3248217 (-) True G665619
TU757820 lncRNA upstream 127463 3258399 ~ 3258982 (-) True G665623
TU757823 lncRNA upstream 187549 3318485 ~ 3323457 (-) False G665624
TU757822 lncRNA upstream 190584 3321520 ~ 3323457 (-) False G665624
TU757824 lncRNA upstream 190584 3321520 ~ 3323457 (-) True G665624
XM_036984568.1 mRNA downstream 8686 3081212 ~ 3120444 (-) True ccm2
XM_036984569.1 mRNA downstream 25784 3081212 ~ 3103346 (-) False ccm2
XM_036984571.1 mRNA downstream 171855 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA downstream 172429 2956624 ~ 2956701 (-) True LOC118965659
XM_036984555.1 mRNA downstream 850693 2233985 ~ 2278437 (-) True LOC110529239
XM_036984577.1 mRNA upstream 582841 3713777 ~ 3823317 (-) False LOC118965483
XM_036984578.1 mRNA upstream 582841 3713777 ~ 3823317 (-) True LOC118965483
XM_036984580.1 mRNA upstream 748897 3879833 ~ 3959350 (-) False LOC110529264
XM_036984582.1 mRNA upstream 748897 3879833 ~ 3959350 (-) False LOC110529264
XM_036984583.1 mRNA upstream 748897 3879833 ~ 3959350 (-) True LOC110529264
TU756738 other downstream 778149 2291402 ~ 2350981 (-) True G664763
TU756703 other downstream 1134600 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 1630559 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 1690689 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 2698872 428191 ~ 430258 (-) True G663235
TU757795 other upstream 105952 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 209120 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 286177 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 389854 3520790 ~ 3521623 (-) True G665797
TU758186 other upstream 537296 3668232 ~ 3670147 (-) True G665927

Expression Profile