RNA id: TU754888


Basic Information

Item Value
RNA id TU754888
length 836
RNA type TUCP
GC content 0.41
exon number 2
gene id G663235
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 428191 ~ 430258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatacagtatgtcctgtggttAAGATACAGTATGTCCAGTGGTTTAGtaacagatacagtatgtcctgtggttcagaCACAGTATATCCTGTGGTTCAGATTcagtatgtcctgtggttcagtaacagatacagtatgtcctgtggttcagtattagatacagtatgtcctatggttcagatacagtatgtcctgtggttcaAATACAGTATGTCCTTTttttcagatacagtatgttctgTGGTTCAgtatcagatacagtatgtcctttGGTTGAGATACAGTATGTTCCGTGGTTCAGTACCAGATACAGTATGTCctgtggttcagatacagtatgtcctgtggttcagattcaacatgtcctgtggttcagtaacagatacagtatgtcctgtggttcagatacagtatgtccagtGGTTTATtaacagatacagtatgtcctgtggttcagatacagtatatccTGTGGTTCAGATTCAGTTTGTCCTgtggttcagatacagtatgtcctgtggttcagatacagtatatcctgtggttcagatacagtatgtcctgtggttcagtaacagatacagtatgtcctgtggttcagtatcagatacagtatgtcctgtggttcagatacagtatgtcctgtggttcagatacagtatgtcctgtggttcagatacagtatgtcctgtggttcagtatcagatacagtatatcctgtggttcagatacagtatgtcctgtggttcagatacagtatgtcctgtggttcagatacagtatgtcctgtggttcagtaacagatacagtatgtcctgtggttcagtatcagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU754876 lncRNA downstream 13106 414869 ~ 415085 (-) True G663225
TU754874 lncRNA downstream 14490 413416 ~ 413701 (-) True G663223
TU754857 lncRNA downstream 39998 386743 ~ 388193 (-) True G663215
TU754848 lncRNA downstream 58373 360065 ~ 369818 (-) True G663206
TU754815 lncRNA downstream 81618 346243 ~ 346573 (-) True G663177
TU754892 lncRNA upstream 2217 432475 ~ 432771 (-) True G663239
TU754897 lncRNA upstream 20454 450712 ~ 451295 (-) True G663244
TU754901 lncRNA upstream 27392 457650 ~ 458015 (-) True G663248
TU754908 lncRNA upstream 29140 459398 ~ 466163 (-) True G663254
TU754909 lncRNA upstream 31205 461463 ~ 464933 (-) True G663255
XM_036986809.1 mRNA downstream 156179 270675 ~ 272012 (-) True LOC118965589
XM_021569966.2 mRNA downstream 177099 204110 ~ 251092 (-) False hmgn3
XM_021569968.2 mRNA downstream 177099 204110 ~ 251092 (-) False hmgn3
XM_021569967.2 mRNA downstream 177100 204110 ~ 251091 (-) False hmgn3
XM_036984532.1 mRNA upstream 269765 700023 ~ 712274 (-) False LOC118965475
XM_036984531.1 mRNA upstream 269765 700023 ~ 712275 (-) True LOC118965475
XM_036986810.1 mRNA upstream 289776 720034 ~ 833087 (-) False LOC110513701
XR_005053012.1 mRNA upstream 730564 1160822 ~ 1162168 (-) False LOC118965602
XR_005053013.1 mRNA upstream 730564 1160822 ~ 1162168 (-) True LOC118965602
TU754858 other downstream 41209 381322 ~ 386982 (-) False G663215
TU754652 other downstream 177137 204128 ~ 251054 (-) False hmgn3
TU755929 other upstream 1007502 1437760 ~ 1438441 (-) True G664089
TU755950 other upstream 1049917 1480175 ~ 1498571 (-) True armc1l
TU756703 other upstream 1563631 1993889 ~ 1994530 (-) True G664733
TU756738 other upstream 1861144 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 2806630 3236888 ~ 3240052 (-) True G665603

Expression Profile