LOC118965475 (LOC106570990)


Basic Information

Item Value
gene id LOC118965475
gene name LOC106570990
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 700023 ~ 712275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984532.1
ACTACGTTTACCAGGATCAGGAAGCGCACTTTGCCGTGTCGTGCGATGCCCATAGACTATCACACAGAGCCTCCTTATTGCATCAGGCATCGTCCACtcggcagagagacagaaaggacagCTAGACTACATGTCATGGACTGGTGGACTACCCTGGCTGCGAGTATAGCCTTCCTCTGGCTGCTGTGTTATATCGACGGCAACGCCGTCCTGGAGCTGCGGCTCCTCCTCCACGCCCTCACCAAAGCAGCGTGCCACCTGTACCTGGCCGTGCTCCCACTGCGGCGCGCCGCACTGCACCTTGCCCGCTTTGTCTGTCACCTGGTAAACCATGGCCCCGCCTCCGCTGGCCGGGcgtctcctcttctcctcgaGGGGGTGTGTGTGATATGTGAAGCGGTACCGGACCTGCTGGGAGCCGGGCTCAGTCTGTGTGCAGTAGTCTGTCACATCCTACAGGGGGTACTGTTCCTGCTGGCCGCCACGGTGAGGTCGGTCCAGGTGAGTGTTCTGGCCCAGATGGacggggagaaggagaggtgggagaAGGAGCAGCATCAAGCTCGGCAGGACGAGAGGAGACAGAACTCCGGGGTGGTGGAATACCTGTCTGTGTTCTGTCAAGACCCCATCAGTTCACTACGACTCAGAGTGGACATGATCAATAGAtaacatcactgtctgtctgtctgtctgtaaaggtGGACATGATCAATAGAtaacatcactgtctgtctgtctgtgaaggTGGACATGATCAATAGATAACAtcaccatctgtctgtctgtctgtctgtctgtctgtctgtctgtcaagacCCCATCAGTTCACTACGACTCAGAGTGGACATGATCAATACAtaacatcactgtctgtctgtctgtctgtctgtgaaggTGGACATGATCAACACAtaacatcactgtctgtctgtctgtgaaggTGGACATGATCAATAGATAACAtcaccatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtcagcgtTGGGCTCAATTCAGACTTGAGTTAAGTATACTTCAAATTCCAATTAAATTCTTGAATTGGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTTAAATTTGAATGAAAGGAAATAGAGTGAAATTCAAATGCCTCTTGTATTGTATATTAGATGTAgtctataactatatatatatttatatatcatGTAAAACATGTCATTATATacatgcctaattaaataaaggttcaattaaataaGTATACATGCATATAAAATAT
>XM_036984531.1
AACTACGTTTACCAGGATCAGGAAGCGCACTTTGCCGTGTCGTGCGATGCCCATAGACTATCACACAGAGCCTCCTTATTGCATCAGGCATCGTCCACtcggcagagagacagaaaggacagCTAGACTACATGTCATGGACTGGTGGACTACCCTGGCTGCGAGTATAGCCTTCCTCTGGCTGCTGTGTTATATCGACGGTAAGAGAACCTGGTTAGCAGAGGTATGGGAGCTTTCTTCGTCAAGGGAACGGTGCGGTATTGGCACGCGCACGGCTCTTCCTCCTAATTGCGGCAACGCCGTCCTGGAGCTGCGGCTCCTCCTCCACGCCCTCACCAAAGCAGCGTGCCACCTGTACCTGGCCGTGCTCCCACTGCGGCGCGCCGCACTGCACCTTGCCCGCTTTGTCTGTCACCTGGTAAACCATGGCCCCGCCTCCGCTGGCCGGGcgtctcctcttctcctcgaGGGGGTGTGTGTGATATGTGAAGCGGTACCGGACCTGCTGGGAGCCGGGCTCAGTCTGTGTGCAGTAGTCTGTCACATCCTACAGGGGGTACTGTTCCTGCTGGCCGCCACGGTGAGGTCGGTCCAGGTGAGTGTTCTGGCCCAGATGGacggggagaaggagaggtgggagaAGGAGCAGCATCAAGCTCGGCAGGACGAGAGGAGACAGAACTCCGGGGTGGTGGAATACCTGTCTGTGTTCTGTCAAGACCCCATCAGTTCACTACGACTCAGAGTGGACATGATCAATAGAtaacatcactgtctgtctgtctgtctgtaaaggtGGACATGATCAATAGAtaacatcactgtctgtctgtctgtgaaggTGGACATGATCAATAGATAACAtcaccatctgtctgtctgtctgtctgtctgtctgtctgtctgtcaagacCCCATCAGTTCACTACGACTCAGAGTGGACATGATCAATACAtaacatcactgtctgtctgtctgtctgtctgtgaaggTGGACATGATCAACACAtaacatcactgtctgtctgtctgtgaaggTGGACATGATCAATAGATAACAtcaccatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtcagcgtTGGGCTCAATTCAGACTTGAGTTAAGTATACTTCAAATTCCAATTAAATTCTTGAATTGGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAATAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTGAAGTAGTAAACAGGATACAGAATTTAAATTTGAATGAAAGGAAATAGAGTGAAATTCAAATGCCTCTTGTATTGTATATTAGATGTAgtctataactatatatatatttatatatcatGTAAAACATGTCATTATATacatgcctaattaaataaaggttcaattaaataaGTATACATGCATATAAAATAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570990 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984532.1 False 1670 mRNA 0.44 2 700023 712274
XM_036984531.1 True 1764 mRNA 0.45 2 700023 712275

Neighbor

gene id symbol gene type direction distance location
LOC118965589 NA coding downstream 428011 270675 ~ 272012 (-)
hmgn3 LOC106570980 coding downstream 448931 204110 ~ 251092 (-)
LOC110515871 phip coding downstream 504018 67258 ~ 196005 (-)
LOC110513701 LOC106570988 coding upstream 7759 716794 ~ 833087 (-)
LOC118965602 NA coding upstream 448547 1160822 ~ 1162168 (-)
LOC118965476 ppp1r14c coding upstream 617398 1307226 ~ 1414828 (-)
LOC118965590 NA coding upstream 711212 1423487 ~ 1424991 (-)
LOC110518775 LOC106592749 coding upstream 711212 1423487 ~ 1463667 (-)
G663488 NA non-coding downstream 2417 696992 ~ 697606 (-)
G663497 NA non-coding downstream 10888 688868 ~ 689135 (-)
G663491 NA non-coding downstream 23922 672324 ~ 676101 (-)
G663485 NA non-coding downstream 38293 660922 ~ 661730 (-)
G663466 NA non-coding downstream 81334 618397 ~ 618689 (-)
G663504 NA non-coding upstream 3824 716099 ~ 716483 (-)
G663522 NA non-coding upstream 65264 777539 ~ 778747 (-)
G663558 NA non-coding upstream 139159 851434 ~ 855500 (-)
G663573 NA non-coding upstream 166320 878595 ~ 878833 (-)
G663235 NA other downstream 269765 428191 ~ 430258 (-)
G663215 NA other downstream 313041 381322 ~ 388193 (-)
G664089 NA other upstream 725485 1437760 ~ 1438441 (-)
armc1l LOC106571055 other upstream 767900 1479450 ~ 1498700 (-)
G664733 NA other upstream 1281614 1993889 ~ 1994530 (-)
G664763 rab10 other upstream 1579127 2291402 ~ 2350981 (-)
G665603 NA other upstream 2524613 3236888 ~ 3240052 (-)

Expression


Co-expression Network