RNA id: XM_036986810.1


Basic Information

Item Value
RNA id XM_036986810.1
length 4441
RNA type mRNA
GC content 0.52
exon number 29
gene id LOC110513701
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 716794 ~ 833087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgcACTGAGTCGCGGACCGACGTCATCCGTCCTGATTTGTAGCAGTCTGGGAATCATCTGCTCATCGCAGCtagtctactctctctctcaattataAACCAAACCGCAACAGGTTCAGAACGACATCAGTGTTCTAGGTTGGGAATTAAGGAATAACGTCGTTAAAGGAGGGATTTGTCCTCAACTAGGAAGATGATGAAACGTGCAGCTCCTGAAGCTGCCGCTACCCTCCTTTGCATTGAACGatGTCTGTGAGTTAGCCAGCTGAATAGAGGTTCTCCCTGTAGCCGATGGTGCTCCCGCTATGAACGCAGCAGCCCTTGGCTGATGATGTAGGACGGACGGAAGAAATCCTGTGATATCCTTCAtcgaagtcccccccccccccccccccccggaagcACAGGGTAGAGGATGAAGGAGCAGGAACCTCTGGAAGCAGatgcagtcagcatgtggaacatcaGTCCAGAGGAGAGGCTGAAACATGATAAACAGTTTAACTCTCTGACACCTGTCCTGGGATACATATCGGgtgAACAGGCGAGTCAGTTCTTCCTCCAGTCTGGTCTTCCTCCTTCAGTCCTGGCTGAGATCTGgTCCCTAGCTGATATGGGTAGTGATGGGAGGATGGACCAACTAGAGTTCTCTATTGCcatgaagctgattaaactgaGGCTGCAGGGGCGGGGCCTTCCCCCCTCTCTACCAATCAGCATGAAGCAGCCACCCACTGCAACGCCCACCTCCATTATGAAGTCTTCAGCATTCTCCGGTATGGGCTCGATGCCAAATCTGTTCGTCGGCATGCCCGTCCTGACCCCGATGCCCCTTAACCCCACCCTGACGTCTGTGCCCTCCCTGGTTCCCATGACGATGCCCCTGGCCAATGGCAACTCCAGCCTCCTCAACCCATCTCCATTTAGCACCACTCCAGcactCCCTCTGTCCTGCTTCTCCTCTCCAATGGCATTCTCTCCATCTGCTGGGATCTCCAAGGCTAACTCCCTATTGGATCTGTCCTCTAGCAGTTCTAACtcatcctccaccacctccctggCCAGTAACTCTCCCAAGACGTGCTCTTGTGATTGGTCCGTTCCCCAGTCCACCAGGCTGAAGTACAGACAACAGTTTAACAGTCTGGACAAGCTGATGAGTGGATACCTCTCTGGCCCTCAGGTGAGGAACGCCCTGACTGCCTCCAACCTCACCCAGACACAGCTAGCTACCATCTGGACCCTGGCTGACGTGGATAAGGACGGTCAGCTGAGAGCTGAGGAGTTTATTCTGGCCATGCACCTGGTAGACATGGTTACGACAGGATGTCCGCTACCCCTCACCCTGCCCTCAGACCTGGTACCCCCCTGTtttagAGATAGCAGGCCAGTAGAGATGTTGAATGGAACTGGGCCCTACCTCTCCACTGGCCTGATAGACGGGACAGCAGAGCTTGAACCTGCACACAAGAACAAGAACAACGtaGTATCGTATGAAGACCGTCTGAAGGAAAACTTTGCGCGAGGCAGCGCTGAGCTGGAGAAGCGTCGTCTGGCTCTAGAAGATAaacagaggagggaggtggagatgagagagagggaggccagTGAGGTGCAGGGGATGAGAGAGGTGtgggagcaggagcaggagaacAAGAGACAAcaagaagaggagagacagagagagagaaaggaggtggGACCAGTGTTCATTTTGTCAACAAAAATAAACTCAAATACACCACATTTCAGTGGCtcgtttaatctctgtctcgctctctctctttttcatgcTCTTTTCTCTCTCGGGCTCTCGCAGGCAGCGCAACAGGAGCAGGAGCGCCAgcggagggaggagtgggagcgAGTGAGGAAGGAAGAGTTGTggaggatgagagaaagagagcaggaggagaTCACTGTGCTCCGAGCCAAGAAGAAGAGTTTGGAGATGGAGCTGGAGGCTGTGGGCAGCAGACACAAGCAGTTATCAGATGGTCTCCGTGACGCCCAGAGTAAGAGGCGGATCCAAAGAGCGGAGATCGATCTCATCAATCAGCGGAGAGATGGGCGTGCCTCCAAGATCAACACCCTGCAGACACAGTTTGAGGACTACCAGAGGAAACTGTGTCAGTTGGTTCCACAGcaacagagactgacagagagactcaAGAACATGGGCTGCAACAACATccctgCTGTGGCAATGACCTCTGTAGGTGGCAGCGTTGCGGAGAAGGGTGTGGTCTGTCGGAGGCTGAAGGACCAATTAGacactctggagagagagacaaccgaCAAGCTGGCCATGATGGACCACTACCAGCAAGACCTCAAGtCAGTCGATATGGATGACTGTGTTCTACAGTCTCTTCTCTCGCTGCTGGGCTGTctcagtcaactcttcctccttATCAAGGACTTGAGGGAGCGGCAGAGGAAGCAGCAGGCTGTTCTGGAGGACCTCGGCCGGGTCAAGGAGCTGaaactgagagagatggagagagggagagaagaggaaagagagagaaagaggaggggcgATGAAGAGGCTGCCAGACAAGCCAAgctggagtcagagaggagagaggaggaggagagaaggaggcgaATTGAGCCGCAGGAGAGAGGAGGCCGCCAGCATCCAGTGCTGAATGCAGATAGTTTATTAACCCTGACCTCCTGCAGAGCCCTGTACCCCTTCACCGCACGCAACGCTGACGAGCTCAGCCTGGACGCTGACTGTTTCatagagGTAGATGATGAGATGGTGGGGGAGCCTGGTTGGCTGTGTGGTAGTTACCGTGGGAACAGGGGCTGGTTCCCCCAGAGCTATGCTGAGAGATGCACCACCCCCCTTGCCTCTGACCTACTGCCCCCTTCCTGTCCAACACTACCACCCAGCCCGGGACTTCCTGACGGAGAGATTGCAGGGGCAGGACGGATCCCCGCCCCCAGCGTCACCCCCATCAAAGACTCCTCCCaggaaaacaacacacacacagaACCTCTACACACCGCTGTTGATGAGTTGGAGAGCCCAGATCCCAGCCAGATAGAAGAGTTCGTGGCCCTGTTCACCTATGAGAGCCCGGAGGCAGGCGACCTGACGTTCTCTGAGGGGGACGTAGTCATGGTAACAGAGCAGGAGGGGGAGTGGTGGAGGGGGTGCATTGGAAACCGGACCGGAGTGTTCCCTTCCAACTACGTCAAACCCATGGAACCAGAGGTCACTAGGCCTGGAGCTGCTTCCAAGAAACCTGAGATCGCCCAGGCGATCACCCTGACTACAGAGCAGCTAAGTCTGTCACCGGGGCAACTGATCGTGGTCCATGCCAAGAACTCCTCCGGCTGGTGGCTTGGGGAATTGCAGGTCCGAGGGAAGGGGCCACGAAGAGGCTGGTTCCACTCCTCTCATGTCAAACTGCTCCCTCCCACAAGCAGCAAGACTACCCCTGCACCTGTCCCAGGTCATCGCCAGGTACAACTTCACAGCAGCCAATTAGGACTTGATGAACTTCTCCAATTGTCAGCTGATCAACGTTATGGACAGTGACAACCCTGATTGGTGGATTGGAGAGGTCAACGGGGTCACGGGGCTGTTGCCAACCAATTACGTCACCATGGCCACTGAGTCCGACCCCAGGCAGTAATGAAAGTAACGCTGGCACcttgtcctctccctcttcttaCTTCTTCTTCTCTGAGCCAATCCTGGAAGCCTCAACTCTTCATCTGCCAGCGagaccctcctcttcttcctcctcttcttcctcctcctcttcctcctcctcttcctcttcttcctcctcctcctcttcctcctcctcttcctacaCTCTGCTTGTATCTCATTTAGAATGCTTTTTGTTCGTCTATCCtcactctttatttctctctctctcctctatcataactagttctctctcctctatcataACTAGTTCTCTCCTCTATCATAACTATTTCTCTCCTCTATCATAActagttctctctcctctatcataACTAGTTCTCTCCTCTATCATAACTAGTTATCTCTCCTCTATCATAACTAGTTCTCTCCTCTATCATAACTACATGTAGTTCTCTATCCTCTATCATaactcgttctctctcctctatcataACTAGTTCTCTCCTCTACCATAACTAGTTCTCTATCCTCTATCATAActagttctctctcctctatcataactagttatctctctcctctatcataactagttctctctctcctctatcataactagttctctctcctctatcataACTAGTTATCTCTCCTCTATCATAACTAGTTCTCTCCTCTACCATAACTAGTTCTCTATCCTCTATCATAACTAGTTATCTCTCCTCTATCATAACTAGTTATCTCTCCTCTATCATAActagttctctctcctctatcataactatttctctctatatcataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU755218 lncRNA downstream 3551 716099 ~ 716483 (-) True G663504
TU755192 lncRNA downstream 22428 696992 ~ 697606 (-) True G663488
TU755209 lncRNA downstream 30899 688868 ~ 689135 (-) True G663497
TU755195 lncRNA downstream 43933 672324 ~ 676101 (-) False G663491
TU755196 lncRNA downstream 43933 672324 ~ 676101 (-) True G663491
TU755291 lncRNA upstream 18347 851434 ~ 855500 (-) False G663558
TU755292 lncRNA upstream 19731 852818 ~ 855500 (-) True G663558
TU755309 lncRNA upstream 45508 878595 ~ 878833 (-) True G663573
TU755313 lncRNA upstream 47849 880936 ~ 881144 (-) True G663577
TU755324 lncRNA upstream 60557 893644 ~ 893868 (-) True G663588
XM_036984531.1 mRNA downstream 7759 700023 ~ 712275 (-) True LOC118965475
XM_036984532.1 mRNA downstream 7760 700023 ~ 712274 (-) False LOC118965475
XM_036986809.1 mRNA downstream 448022 270675 ~ 272012 (-) True LOC118965589
XM_021569966.2 mRNA downstream 468942 204110 ~ 251092 (-) False hmgn3
XM_021569968.2 mRNA downstream 468942 204110 ~ 251092 (-) False hmgn3
XR_005053012.1 mRNA upstream 327735 1160822 ~ 1162168 (-) False LOC118965602
XR_005053013.1 mRNA upstream 327735 1160822 ~ 1162168 (-) True LOC118965602
XM_036984533.1 mRNA upstream 496586 1329673 ~ 1414828 (-) False LOC118965476
XM_036986811.1 mRNA upstream 590400 1423487 ~ 1424991 (-) True LOC118965590
XM_036986813.1 mRNA upstream 590400 1423487 ~ 1463667 (-) False LOC110518775
TU754888 other downstream 289776 428191 ~ 430258 (-) True G663235
TU754858 other downstream 333052 381322 ~ 386982 (-) False G663215
TU754652 other downstream 468980 204128 ~ 251054 (-) False hmgn3
TU755929 other upstream 604673 1437760 ~ 1438441 (-) True G664089
TU755950 other upstream 647088 1480175 ~ 1498571 (-) True armc1l
TU756703 other upstream 1160802 1993889 ~ 1994530 (-) True G664733
TU756738 other upstream 1458315 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 2403801 3236888 ~ 3240052 (-) True G665603

Expression Profile