RNA id: XM_021569968.2


Basic Information

Item Value
RNA id XM_021569968.2
length 1353
RNA type mRNA
GC content 0.48
exon number 6
gene id hmgn3
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 204110 ~ 251092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGGTCTACATATGATTAGCATGTGGTTATGGAAGGTGTTTCGTATCGATCCAGTATGTGGTGACAGTTCTCAGCTTGCGCCGTGGACCTGCTGGTTGAACTCTTCGATCCTCTGGAGGGAATAATATTTCTGTAGCACAACATGCCTAAAAGGAAGTCTCCTGAAGGGGCCCATGCCAAGGATGCCTCCAAGGTCACCAAGCAGAAGGTCACCAAGCAGGAGcCCACCAGGCGATCAGAGAGGTTGTCATCGAAACCAGCTCCTCCCAAACCTGTTGAGGTCAAGCCTAAGAAGGCTATATCCAAGGACATGAAGGAAAAGAAAGGTGGCGCTAAGGTGAAGGAGGATGGCCCCTCCCATAACGGACAGGCTATGACTGAGGAGGAGACTGATGCTGTGGAGCCGGAGTCGGTCAAGGAGAAGGAATGAGGAAGTGGGGGGGTCTTTCTCTGACTCCTCCCAAACCAGTACCATGGAAACGGAGGATTATTTTTTTTTCCAGGATTTTGTAAAATGCTGATTTTTTGTTTGTCCTGTGATACTAGCAAAGATAACCAGCAGCAACCCACTTCCACACTCCTTAcagttgtctctccctctcctctcctctcctctcctctcctctcctctcctctcctctcctttcctttcctttcctttcctttcctttccttcctggAAGACAGAATGAAGTGACATGTTTTTATAAAATGGCCTCAAGTATTCTTCCTCTGGCAGTGGGAGGAGCCTCATGGGGTCACCATGGTGATGCCTCTCAGTTCCTCTCTAAACAATGTCATGTCCTCTTGACCGTGATGGCTCTTTTGTGATGACATCGCTGTAAATTAAGTGGACCTTCCACCTCTGACATCAGAGACCCAAGGGTCAGACTAGGCTCCTATGATATAACAAGTGACCTTTGACCCTGACCTGAGGTGTTGCCATGGTGAATATTTGCAGCTTTTTAAACAGATTTAGAAGTGTTCAGAATCGCCAGCCACTCTTGTGTTGTAATTTGTGAGTCTGTGGTTGTCTGTCAGAGTAGACTGTTCTAGAACTCTGGCTTCCAGAACCTCTGGGTTCCACCATGGTTGTctgtcagagcagactgttctagAACTCTGGCTTCCAGAACCTCTGGGTTCCACCCTGGTTGTctgtcagagcagactgttctagAACTCTGGCTTCCAGAACCTCTGGGTTCCACCCTGGTTGTCTGTCAGAGCAGCATAGCAATAACAAGTGGCGCTTCTGTTCTAGAACTCTGAGGCTTCTAGAACCTCTCTGGTTCCACCCTGCCTGTGGGAAAACATTATTTTGAAATAAAAACAGAGTTGACATTTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU754694 lncRNA downstream 23543 180237 ~ 180567 (-) True G663068
TU754688 lncRNA downstream 45663 158035 ~ 158447 (-) True G663063
TU754674 lncRNA downstream 105800 97908 ~ 98310 (-) True G663050
TU754663 lncRNA downstream 129610 73784 ~ 74500 (-) True G663041
TU754660 lncRNA downstream 152726 51126 ~ 51384 (-) True G663038
TU754730 lncRNA upstream 1106 252198 ~ 253555 (-) False G663098
TU754731 lncRNA upstream 1322 252414 ~ 253555 (-) True G663098
TU754734 lncRNA upstream 7333 258425 ~ 258652 (-) True G663101
TU754741 lncRNA upstream 14131 265223 ~ 265566 (-) True G663108
TU754784 lncRNA upstream 56231 307323 ~ 308302 (-) False G663148
XM_036984528.1 mRNA downstream 8105 67258 ~ 196005 (-) True LOC110515871
XM_036984530.1 mRNA downstream 8106 67258 ~ 196004 (-) False LOC110515871
XM_036986809.1 mRNA upstream 19583 270675 ~ 272012 (-) True LOC118965589
XM_036984532.1 mRNA upstream 448931 700023 ~ 712274 (-) False LOC118965475
XM_036984531.1 mRNA upstream 448931 700023 ~ 712275 (-) True LOC118965475
XM_036986810.1 mRNA upstream 468942 720034 ~ 833087 (-) False LOC110513701
XR_005053012.1 mRNA upstream 909730 1160822 ~ 1162168 (-) False LOC118965602
TU754858 other upstream 130230 381322 ~ 386982 (-) False G663215
TU754888 other upstream 177099 428191 ~ 430258 (-) True G663235
TU755929 other upstream 1186668 1437760 ~ 1438441 (-) True G664089
TU755950 other upstream 1229083 1480175 ~ 1498571 (-) True armc1l
TU756703 other upstream 1742797 1993889 ~ 1994530 (-) True G664733

Expression Profile