RNA id: TU754908


Basic Information

Item Value
RNA id TU754908
length 415
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G663254
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 459398 ~ 466163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcagatatacagacactgaattaatactggaccagatcagatatacagacactgaattaatactggaccagatcagatgtacagacactgaattaatactggaccagatcagataaacagacactgaattaatactggaccagatcagatatacagacactgaattaatactggaccagatcagatatacagacactgaattaatactggaccagatcagataaacagacactgaattaatactggaccagatcagatatacagacactgaattaatactagatcagatcagatatacagacactgcattaatactagatcagatatacagacactgaattaatactggaccagatcagatatacagacactgcattaatactggatcagatatacagacactgaattaatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU754901 lncRNA downstream 1383 457650 ~ 458015 (-) True G663248
TU754897 lncRNA downstream 8103 450712 ~ 451295 (-) True G663244
TU754892 lncRNA downstream 26627 432475 ~ 432771 (-) True G663239
TU754876 lncRNA downstream 44313 414869 ~ 415085 (-) True G663225
TU754874 lncRNA downstream 45697 413416 ~ 413701 (-) True G663223
TU754912 lncRNA upstream 287 466450 ~ 467266 (-) True G663257
TU755133 lncRNA upstream 80721 546884 ~ 547390 (-) True G663438
TU755141 lncRNA upstream 106277 572440 ~ 572722 (-) False G663445
TU755142 lncRNA upstream 106277 572440 ~ 573140 (-) True G663445
TU755163 lncRNA upstream 152234 618397 ~ 618689 (-) True G663466
XM_036986809.1 mRNA downstream 187386 270675 ~ 272012 (-) True LOC118965589
XM_021569966.2 mRNA downstream 208306 204110 ~ 251092 (-) False hmgn3
XM_021569968.2 mRNA downstream 208306 204110 ~ 251092 (-) False hmgn3
XM_021569967.2 mRNA downstream 208307 204110 ~ 251091 (-) False hmgn3
XM_036984532.1 mRNA upstream 233860 700023 ~ 712274 (-) False LOC118965475
XM_036984531.1 mRNA upstream 233860 700023 ~ 712275 (-) True LOC118965475
XM_036986810.1 mRNA upstream 253871 720034 ~ 833087 (-) False LOC110513701
XR_005053012.1 mRNA upstream 694659 1160822 ~ 1162168 (-) False LOC118965602
XR_005053013.1 mRNA upstream 694659 1160822 ~ 1162168 (-) True LOC118965602
TU754888 other downstream 29140 428191 ~ 430258 (-) True G663235
TU754858 other downstream 72416 381322 ~ 386982 (-) False G663215
TU754652 other downstream 208344 204128 ~ 251054 (-) False hmgn3
TU755929 other upstream 971597 1437760 ~ 1438441 (-) True G664089
TU755950 other upstream 1014012 1480175 ~ 1498571 (-) True armc1l
TU756703 other upstream 1527726 1993889 ~ 1994530 (-) True G664733
TU756738 other upstream 1825239 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 2770725 3236888 ~ 3240052 (-) True G665603

Expression Profile