RNA id: TU758017


Basic Information

Item Value
RNA id TU758017
length 834
RNA type TUCP
GC content 0.40
exon number 1
gene id G665797
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3520790 ~ 3521623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaaggcaatgacccaagtgaaacaatttaaaggcaaagctacagaatactaattgagtgtatgtaaacttctgactcgctaggaatgtgatgaaagaaataaaagctgaaataaataattctcgcaactattattctgacatttcacattcttaaaataaagtggtgatcctaactgatctaaaacagggagtatttactaggattaaatgtcaggaattgtgaaaaactgttgaTGAAAATTCAACTTCCTGTTCCAAGGATGAGAGGACGGCCGTCCCCACATTAAAAGGACAAGATCACcaacagaactaagccaacctcagcgtgagctctgGTTGAACGACAAAAACCTAATGAAATTAGAATAGAATTTCAACGTAAAGATGACGATCAACACGCCgaaaggatgaatttcgactataccagccagaatatagcatgagcttaaagtatggcaacatagaatgaactttgaactcttattcactaaagaagtgatacctgCTAGCCGTTGCGTTAGCAACTgcagctgtaaacgtgggctaggagaggacggACAACGGATCCATTCTACCACGCTCCAGTTGACCACTCAACATTCTTCAGATGACAAGAGATCCATGCTGGACAACTATGACCaatctaccgaagcgcagctcagagtaaatatttgttgcattttccttttccaaatgggcggttatttagatTCTGTGTTTACGATAGCATACCTGCCTAAGCCCGATAGAGACACAAGAtccttttgttcctcagtcttcccgctctttcattcaaaacccaaccccctttctttgtgtaaccagccgtca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU758010 lncRNA downstream 5812 3514735 ~ 3514978 (-) True G665790
TU758004 lncRNA downstream 20056 3500466 ~ 3500734 (-) True G665784
TU757958 lncRNA downstream 69001 3451442 ~ 3451789 (-) True G665744
TU757933 lncRNA downstream 90462 3427394 ~ 3430328 (-) True G665727
TU757928 lncRNA downstream 97466 3423087 ~ 3423324 (-) True G665722
TU758032 lncRNA upstream 7514 3529137 ~ 3529353 (-) True G665810
TU758053 lncRNA upstream 47368 3568991 ~ 3569412 (-) True G665829
TU758074 lncRNA upstream 63822 3585445 ~ 3585745 (-) True G665848
TU758133 lncRNA upstream 76583 3598206 ~ 3598439 (-) True G665892
TU758136 lncRNA upstream 80307 3601930 ~ 3602162 (-) True G665895
XM_036984568.1 mRNA downstream 400346 3081212 ~ 3120444 (-) True ccm2
XM_036984569.1 mRNA downstream 417444 3081212 ~ 3103346 (-) False ccm2
XM_036984571.1 mRNA downstream 563515 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA downstream 564089 2956624 ~ 2956701 (-) True LOC118965659
XM_036984555.1 mRNA downstream 1242353 2233985 ~ 2278437 (-) True LOC110529239
XM_036984577.1 mRNA upstream 192154 3713777 ~ 3823317 (-) False LOC118965483
XM_036984578.1 mRNA upstream 192154 3713777 ~ 3823317 (-) True LOC118965483
XM_036984580.1 mRNA upstream 358210 3879833 ~ 3959350 (-) False LOC110529264
XM_036984582.1 mRNA upstream 358210 3879833 ~ 3959350 (-) False LOC110529264
XM_036984583.1 mRNA upstream 358210 3879833 ~ 3959350 (-) True LOC110529264
TU757924 other downstream 102502 3417113 ~ 3418288 (-) True G665718
TU757859 other downstream 179830 3340056 ~ 3340960 (-) True G665655
TU757795 other downstream 280738 3236888 ~ 3240052 (-) True G665603
TU756738 other downstream 1169809 2291402 ~ 2350981 (-) True G664763
TU756703 other downstream 1526260 1993889 ~ 1994530 (-) True G664733
TU758186 other upstream 146609 3668232 ~ 3670147 (-) True G665927
TU759716 other upstream 967183 4488806 ~ 4490220 (-) True G667122
TU760267 other upstream 2027180 5548803 ~ 5551245 (-) True znf395b
TU761008 other upstream 2684935 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 2758573 6280196 ~ 6281640 (-) True G668238

Expression Profile