LOC110529255 (rps12)


Basic Information

Item Value
gene id LOC110529255
gene name rps12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 2947015 ~ 2957275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984571.1
TAGACAGGCAGAATAATGGCCACCTACTTCTCGGGTCCTTCTGCCCTTAAATGAATGTCGCCGACTAAATGACGTTCTCTTTACCCGCTGTCACAGAGGAGTTAGGAATTTTAGGTCCCCCATCCATCGCTAATCGACAATGGCCGAGGAAGGCATCGCTGCTGGAGGTGTGATGGATGTCAACACCGCTCTCCCCGAGGTGCTCAAGACCGCCCTCATCCATGACGGCCTGGCTCGTGGTATCCGCGAGGCTGCCAAGGCTCTGGACAAGCGCCAGGCCCACCTCTGCGTTCTTGCGGCCAACTGTGATGAGCCCATGTACGTCAAGCTGGTGGAGGCCCTTTGCGCCGAGCATCAGATTAACCTCATCAAGGTTGATGACAACAAGAAGCTGGGCGAATGGGTTGGTCTGTGCAAGATCGACCGGGAGGGAAAACCCCGTAAGGTGGTGGGCTGCAGCTGTGTTGTGATCAAGGACTATGGCAAGGAGTCTCAGGCTAAGGACGTGATTGAGGAATACTTCAAGGCCAAGAAATGAGTTGTCATTttcaataaaagctgaaatgaa

Function

symbol description
rps12 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12).

NR:

description
PREDICTED: 40S ribosomal protein S12

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02951 RP-S12e, RPS12; small subunit ribosomal protein S12e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984571.1 True 568 mRNA 0.53 6 2947015 2957275

Neighbor

gene id symbol gene type direction distance location
LOC110529239 LOC105018054 coding downstream 668578 2233985 ~ 2278437 (-)
LOC110531067 dnmt3a coding downstream 746108 2110060 ~ 2200907 (-)
LOC110529242 LOC106591799 coding downstream 850183 2061698 ~ 2096832 (-)
selenoi LOC106571011 coding downstream 925389 1976310 ~ 2021626 (-)
LOC110529244 NA coding downstream 976551 1968290 ~ 1975576 (-)
ccm2 ccm2 coding upstream 123937 3081212 ~ 3120444 (-)
LOC118965483 LOC100692480 coding upstream 756502 3713777 ~ 3823317 (-)
LOC110529264 LOC106571015 coding upstream 922558 3879833 ~ 3959350 (-)
LOC110529266 LOC106571016 coding upstream 1020057 3977332 ~ 3990108 (-)
baalcb LOC106571017 coding upstream 1080341 4037616 ~ 4047801 (-)
G665500 NA non-coding downstream 3536 2943215 ~ 2943479 (-)
G665498 NA non-coding downstream 5732 2940785 ~ 2941283 (-)
G665312 NA non-coding downstream 9861 2936926 ~ 2937154 (-)
G665311 NA non-coding downstream 10189 2936500 ~ 2936826 (-)
G665299 NA non-coding downstream 42074 2904692 ~ 2904941 (-)
G665508 NA non-coding upstream 2541 2959816 ~ 2960269 (-)
G665515 NA non-coding upstream 29780 2987055 ~ 2996407 (-)
G665520 NA non-coding upstream 43723 3000998 ~ 3001377 (-)
G665521 LOC106571004 non-coding upstream 45588 3002863 ~ 3003241 (-)
G665523 LOC106571004 non-coding upstream 47225 3004500 ~ 3004807 (-)
G664763 rab10 other downstream 596034 2291402 ~ 2350981 (-)
G664733 NA other downstream 952485 1993889 ~ 1994530 (-)
armc1l LOC106571055 other downstream 1448444 1479450 ~ 1498700 (-)
G664089 NA other downstream 1508574 1437760 ~ 1438441 (-)
G663235 NA other downstream 2516757 428191 ~ 430258 (-)
G665603 NA other upstream 279613 3236888 ~ 3240052 (-)
G665655 NA other upstream 382781 3340056 ~ 3340960 (-)
G665718 NA other upstream 459838 3417113 ~ 3418288 (-)
G665797 NA other upstream 563515 3520790 ~ 3521623 (-)
G665927 NA other upstream 710957 3668232 ~ 3670147 (-)

Expression


Co-expression Network