LOC118965483 (LOC100692480)


Basic Information

Item Value
gene id LOC118965483
gene name LOC100692480
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3713777 ~ 3823317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984577.1
ttacttatgtACTTTACACCACTTTTGACCTAACAAGAGAAACTGCTGAAGCACAATTACATTTTGAAATGGTCCCTCGTGTATTATTCTATTCTAGCAGTACTTTGAGACCTGGACTGATTTGATCCGGGGGGCTTTAAAACGCGCCGTGCAGTTACCCATCCCTGAGCTAGATGATGTACACGATGTATTTTGCGCATAGGTTTTACCCCGCCCGCATCCAATGTAACATCCCTCCAGAAATGGGTGTGGCACACATTTCATTCGTGACCGCCCCCTATGTTCCGCGGTTCCTCGGTTCAGCAGTAGCCTACCGAAAAACAACGTGGTTAAATAGAGGCTGCGTTGCCCATGCTTTCACCAGACCCTTGTTTCAGACAACGGGAGTTGGTCGGAACTAGGAAACACGGACATTTCTGACATGCTAAATGTTTGTAGTTATACACGTGCCGCGTTCAACGAATCAGCATTTCTGAGTTCtctgagtttcctagttccgactggATGTGAACGCCGCACAAATCCTATACCCGGGCGGTTCATTCCGCGCATCACTCACTCGTAGTCGACTATTGTATGTAGGCTGGCTACTAGTCTACTGTTTATGTTTCGGAGCCAAAGCAAGCGCAGGCTAAAGTAGGCTATCCACTTACCGCTGTCAGAGTTTATTTTACGTCTGCTACGCTGGGTTAGGCTACTGTCAGAGACACACCTAAAGCATGGATGCTCTGAAATCAGCTGGAAGAGCGATTATCAAGAGTCCCGGAGTTCCGCGGCACACATGGGGCACCTCCAAGCACGACAAGCTGCCAGAGAACTGGACAGACACCAAGGAGACCCTATTGGAAGGGATGGTTTTCCAGGTCAAGTACCTGGGGATGACTCTGGTGGGACAGCCTAAAGGAGAGGACATGGCCGCTGCAGCAATACACAGGATAGTCTCTACGGCCCGGGCAAGTGCTAAGAAGTTCCGTAAGGTGACCTTGACCATCTCTCCTAAGGGAATCATcatcacagacacagagacacaggacCTCATAGAGAATGTGTCCATATATAGAATCTCCTACTGTACTGCAGATAAAACCCAGGACAAAGTGTTTGCCTACGTCTCCCAGATTCAGTTGGACGAGACCCTCGAGTGCCACGCCTTCCTCTGTCACAAGAAGAAGATCGCCCAAGCTGTGACTCTCACCGTAGCCCAGGCCTTCACAGTAGCTCTGGACCTGTGGGAGATTGctcaggaagaTAAAAGTCAGAAGGCCAGGAGGACATGCTGCGCGTGTTCTGTcagtgatggacagacagaggctATAAACACACACAGCGTCTCAGacTCAGAGAAGCAGCAGCCCTTGAggaaggaggagaaacagagacggCCATTTTTTTCCATGTCATTCAGCTCTCCTTCACCCAGCAACAAAACCGCCAGGAAACGACCAATCAAACACGGCTCCTGGGATGTGGAGGATGGCCTCGAAGATGCATTCTCAAGCAGTATGGAGGTAGAAGAGATGGACACTGTCTGAGGATACAGCTCTGAGCCCCCTGCAGCAGGaggaccaccaccacctccccctaGAGGACCTCATGTCCCCGAGCAGTGACGACTCAGACTAACACAACAACTGCCAGACATACTGCTGTCCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGTCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGTCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCAACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCCACAAAACAACCAAGGCTGCCAGACATAGTGCTGCCCCACAAAACAACCAAGGCTGCcagacatttttatttaactaggcaagtcagttaaaaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaatgacagatttgtaccttggagatttgatcttgcaacctttcagttaaagtccaacgctctaaccactaggctacactgccgctGTCAGACATATTGCTGTCCCCACGAACCACCAGCTCTGGACAGATAAAACATACTGCTGCCCCCACAAACCATCAGCTCTGGACAAGTCAAACATACTGCTGCCTCCACAAACCATCAGCTCTGGACAGGTCAAACATACTGCTGCCCCCACAAACCACCAGCTCTGGACAGGTCAAACATACTGCTGCCCCAAAACCCACCAGCTCTGGACAGGTCAAACATACTGCTGCCCCAAAACCCACCAGCTTTGGACAGGTCAAACATACTGCTGCCCCAAACCACCAGCTCCGGACAGGTCAAACAGCCCTCTATGTCTGCCTGTAGATCATTCTTATTCCAGTGTACTAGAACTAATCATCACTCAACATGGACAAACAGCAATCATCTCTCTACCTAAGTCTCTGATCTCTCAGTCTGCGTGTGAAGTGACACCCTATTCGTTAGAGTTTCCAAACCCGTAACTAGCCTACGGATATTGTTGAACTCTCGTTGTCTAGGGCTCCTAGgcctagttacatggtctgtatcCTGAATGAACCGTGTTGGATGCACATGTGCCCAAGGAAACGGCTCAGGACCTCTTGGTCGGGCCAGTCCAAGCGGATTACTAGTTGTTCAGATGGTGAcgaaaataaacataaaaaaaaacgtGGCCACCAAACCAACCAGCAGCCTCACGACTTTCCAGCTGGGACACTGACTGACCATCATCCTAATTAGCAACACCTGATGTGTTCATCAACCAGGCTCAACACTCATCAACCAGGCTGCTTCAAGAATGCTGCTGCCCCCTGGGGGTTGGAGTGTGGAAGTGTATACTGGATAGTGTGTTTTATGTCCCAACACTGACCCCCCATAACGTaacactatatagtacactactgttgatcaGGACCCACATAGGTCTCttgtcgaaagtagtgcactacagtgccttgcaaaaggtTTCATCCCcattggtgtttttcctatttttttgcttcacaacctgtaatttaaatagatttttatttggattccatgtcatggacaaaca
>XM_036984578.1
ttacttatgtACTTTACACCACTTTTGACCTAACAAGAGAAACTGCTGAAGCACAATTACATTTTGAAATGGTCCCTCGTGTATTATTCTATTCTAGCAGTACTTTGAGACCTGGACTGATTTGATCCGGGGGGCTTTAAAACGCGCCGTGCAGTTACCCATCCCTGAGCTAGATGATGTACACGATGTATTTTGCGCATAGGTTTTACCCCGCCCGCATCCAATGTAACATCCCTCCAGAAATGGGTGTGGCACACATTTCATTCGTGACCGCCCCCTATGTTCCGCGGTTCCTCGGTTCAGCAGTAGCCTACCGAAAAACAACGTGGTTAAATAGAGGCTGCGTTGCCCATGCTTTCACCAGACCCTTGTTTCAGACAACGGGAGTTGGTCGGAACTAGGAAACACGGACATTTCTGACATGCTAAATGTTTGTAGTTATACACGTGCCGCGTTCAACGAATCAGCATTTCTGAGTTCtctgagtttcctagttccgactggATGTGAACGCCGCACAAATCCTATACCCGGGCGGTTCATTCCGCGCATCACTCACTCGTAGTCGACTATTGTATGTAGGCTGGCTACTAGTCTACTGTTTATGTTTCGGAGCCAAAGCAAGCGCAGGCTAAAGTAGGCTATCCACTTACCGCTGTCAGAGTTTATTTTACGTCTGCTACGCTGGGTTAGGCTACTGTCAGAGACACACCTAAAGCATGGATGCTCTGAAATCAGCTGGAAGAGCGATTATCAAGAGTCCCGGAGTTCCGCGGCACACATGGGGCACCTCCAAGCACGACAAGCTGCCAGAGAACTGGACAGACACCAAGGAGACCCTATTGGAAGGGATGGTTTTCCAGGTCAAGTACCTGGGGATGACTCTGGTGGGACAGCCTAAAGGAGAGGACATGGCCGCTGCAGCAATACACAGGATAGTCTCTACGGCCCGGGCAAGTGCTAAGAAGTTCCGTAAGGTGACCTTGACCATCTCTCCTAAGGGAATCATcatcacagacacagagacacaggacCTCATAGAGAATGTGTCCATATATAGAATCTCCTACTGTACTGCAGATAAAACCCAGGACAAAGTGTTTGCCTACGTCTCCCAGATTCAGTTGGACGAGACCCTCGAGTGCCACGCCTTCCTCTGTCACAAGAAGAAGATCGCCCAAGCTGTGACTCTCACCGTAGCCCAGGCCTTCACAGTAGCTCTGGACCTGTGGGAGATTGctcaggaagaTAAAAGTCAGAAGGCCAGGAGGACATGCTGCGCGTGTTCTGTcagtgatggacagacagaggctATAAACACACACAGCGTCTCAGacTCAGAGAAGCAGCAGCCCTTGAggaaggaggagaaacagagacggCCATTTTTTTCCATGTCATTCAGCTCTCCTTCACCCAGCAACAAAACCGCCAGGAAACGACCAATCAAACACGGCTCCTGGGATGTGGAGGATGGCCTCGAAGATGCATTCTCAAGTCTGAGGATACAGCTCTGAGCCCCCTGCAGCAGGaggaccaccaccacctccccctaGAGGACCTCATGTCCCCGAGCAGTGACGACTCAGACTAACACAACAACTGCCAGACATACTGCTGTCCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGTCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGTCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCCACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCAACAAAACAACCAAGGCTGCCAGACATACTGCTGCCCCACAAAACAACCAAGGCTGCCAGACATAGTGCTGCCCCACAAAACAACCAAGGCTGCcagacatttttatttaactaggcaagtcagttaaaaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaatgacagatttgtaccttggagatttgatcttgcaacctttcagttaaagtccaacgctctaaccactaggctacactgccgctGTCAGACATATTGCTGTCCCCACGAACCACCAGCTCTGGACAGATAAAACATACTGCTGCCCCCACAAACCATCAGCTCTGGACAAGTCAAACATACTGCTGCCTCCACAAACCATCAGCTCTGGACAGGTCAAACATACTGCTGCCCCCACAAACCACCAGCTCTGGACAGGTCAAACATACTGCTGCCCCAAAACCCACCAGCTCTGGACAGGTCAAACATACTGCTGCCCCAAAACCCACCAGCTTTGGACAGGTCAAACATACTGCTGCCCCAAACCACCAGCTCCGGACAGGTCAAACAGCCCTCTATGTCTGCCTGTAGATCATTCTTATTCCAGTGTACTAGAACTAATCATCACTCAACATGGACAAACAGCAATCATCTCTCTACCTAAGTCTCTGATCTCTCAGTCTGCGTGTGAAGTGACACCCTATTCGTTAGAGTTTCCAAACCCGTAACTAGCCTACGGATATTGTTGAACTCTCGTTGTCTAGGGCTCCTAGgcctagttacatggtctgtatcCTGAATGAACCGTGTTGGATGCACATGTGCCCAAGGAAACGGCTCAGGACCTCTTGGTCGGGCCAGTCCAAGCGGATTACTAGTTGTTCAGATGGTGAcgaaaataaacataaaaaaaaacgtGGCCACCAAACCAACCAGCAGCCTCACGACTTTCCAGCTGGGACACTGACTGACCATCATCCTAATTAGCAACACCTGATGTGTTCATCAACCAGGCTCAACACTCATCAACCAGGCTGCTTCAAGAATGCTGCTGCCCCCTGGGGGTTGGAGTGTGGAAGTGTATACTGGATAGTGTGTTTTATGTCCCAACACTGACCCCCCATAACGTaacactatatagtacactactgttgatcaGGACCCACATAGGTCTCttgtcgaaagtagtgcactacagtgccttgcaaaaggtTTCATCCCcattggtgtttttcctatttttttgcttcacaacctgtaatttaaatagatttttatttggattccatgtcatggacaaaca

Function

NR:

description
low density lipoprotein receptor adapter protein 1-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984577.1 False 3152 mRNA 0.49 10 3713777 3823317
XM_036984578.1 True 3123 mRNA 0.49 9 3713777 3823317

Neighbor

gene id symbol gene type direction distance location
ccm2 ccm2 coding downstream 593333 3081212 ~ 3120444 (-)
LOC110529255 rps12 coding downstream 756502 2947015 ~ 2957275 (-)
LOC118965659 NA coding downstream 757076 2956624 ~ 2956701 (-)
LOC110529239 LOC105018054 coding downstream 1435340 2233985 ~ 2278437 (-)
LOC110531067 dnmt3a coding downstream 1512870 2110060 ~ 2200907 (-)
LOC110529264 LOC106571015 coding upstream 56516 3879833 ~ 3959350 (-)
LOC110529266 LOC106571016 coding upstream 154015 3977332 ~ 3990108 (-)
baalcb LOC106571017 coding upstream 214299 4037616 ~ 4047801 (-)
LOC110529162 ptk2b coding upstream 456688 4279536 ~ 4358156 (-)
LOC110529271 ei2bb coding upstream 759230 4582547 ~ 4590496 (-)
G666800 NA non-coding downstream 608 3710014 ~ 3713169 (-)
G666801 NA non-coding downstream 4084 3709336 ~ 3709693 (-)
G666799 NA non-coding downstream 4906 3706742 ~ 3708871 (-)
G666795 NA non-coding downstream 9079 3703950 ~ 3704698 (-)
G665924 NA non-coding downstream 51247 3662210 ~ 3662530 (-)
G666850 NA non-coding upstream 587 3823904 ~ 3824682 (-)
G666852 NA non-coding upstream 4448 3827765 ~ 3828018 (-)
G666853 NA non-coding upstream 5119 3828436 ~ 3828716 (-)
G666874 NA non-coding upstream 47660 3870977 ~ 3871269 (-)
G666875 NA non-coding upstream 48502 3871819 ~ 3872049 (-)
G665927 NA other downstream 43630 3668232 ~ 3670147 (-)
G665797 NA other downstream 192154 3520790 ~ 3521623 (-)
G665718 NA other downstream 295489 3417113 ~ 3418288 (-)
G665655 NA other downstream 372817 3340056 ~ 3340960 (-)
G665603 NA other downstream 473725 3236888 ~ 3240052 (-)
G667122 NA other upstream 665489 4488806 ~ 4490220 (-)
znf395b LOC106571047 other upstream 1725486 5535756 ~ 5551550 (-)
G668192 NA other upstream 2383241 6206558 ~ 6284021 (-)
G668238 NA other upstream 2456879 6280196 ~ 6281640 (-)
wdr21 dcaf4 other upstream 2963215 6786377 ~ 6801903 (-)

Expression


Co-expression Network