RNA id: XM_036984571.1


Basic Information

Item Value
RNA id XM_036984571.1
length 568
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110529255
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 2947015 ~ 2957275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACAGGCAGAATAATGGCCACCTACTTCTCGGGTCCTTCTGCCCTTAAATGAATGTCGCCGACTAAATGACGTTCTCTTTACCCGCTGTCACAGAGGAGTTAGGAATTTTAGGTCCCCCATCCATCGCTAATCGACAATGGCCGAGGAAGGCATCGCTGCTGGAGGTGTGATGGATGTCAACACCGCTCTCCCCGAGGTGCTCAAGACCGCCCTCATCCATGACGGCCTGGCTCGTGGTATCCGCGAGGCTGCCAAGGCTCTGGACAAGCGCCAGGCCCACCTCTGCGTTCTTGCGGCCAACTGTGATGAGCCCATGTACGTCAAGCTGGTGGAGGCCCTTTGCGCCGAGCATCAGATTAACCTCATCAAGGTTGATGACAACAAGAAGCTGGGCGAATGGGTTGGTCTGTGCAAGATCGACCGGGAGGGAAAACCCCGTAAGGTGGTGGGCTGCAGCTGTGTTGTGATCAAGGACTATGGCAAGGAGTCTCAGGCTAAGGACGTGATTGAGGAATACTTCAAGGCCAAGAAATGAGTTGTCATTttcaataaaagctgaaatgaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02951 RP-S12e, RPS12; small subunit ribosomal protein S12e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU757657 lncRNA downstream 3536 2943215 ~ 2943479 (-) True G665500
TU757655 lncRNA downstream 5732 2940785 ~ 2941283 (-) True G665498
TU757407 lncRNA downstream 9861 2936926 ~ 2937154 (-) True G665312
TU757406 lncRNA downstream 10189 2936500 ~ 2936826 (-) True G665311
TU757393 lncRNA downstream 42074 2904692 ~ 2904941 (-) True G665299
TU757666 lncRNA upstream 2541 2959816 ~ 2960269 (-) False G665508
TU757667 lncRNA upstream 2541 2959816 ~ 2960269 (-) True G665508
TU757677 lncRNA upstream 29780 2987055 ~ 2996407 (-) False G665515
TU757675 lncRNA upstream 37513 2994788 ~ 2996407 (-) False G665515
TU757676 lncRNA upstream 37513 2994788 ~ 2996407 (-) True G665515
XM_036984555.1 mRNA downstream 668578 2233985 ~ 2278437 (-) True LOC110529239
XM_036984548.1 mRNA downstream 746108 2110060 ~ 2200907 (-) False LOC110531067
XM_036984549.1 mRNA downstream 746108 2110060 ~ 2200907 (-) False LOC110531067
XM_036984550.1 mRNA downstream 746108 2110060 ~ 2200907 (-) True LOC110531067
XM_036984551.1 mRNA downstream 746109 2110060 ~ 2200906 (-) False LOC110531067
XM_036984569.1 mRNA upstream 123937 3081212 ~ 3103346 (-) False ccm2
XM_036984568.1 mRNA upstream 123937 3081212 ~ 3120444 (-) True ccm2
XM_036984577.1 mRNA upstream 756502 3713777 ~ 3823317 (-) False LOC118965483
XM_036984578.1 mRNA upstream 756502 3713777 ~ 3823317 (-) True LOC118965483
XM_036984580.1 mRNA upstream 922558 3879833 ~ 3959350 (-) False LOC110529264
TU756738 other downstream 596034 2291402 ~ 2350981 (-) True G664763
TU756703 other downstream 952485 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 1448444 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 1508574 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 2516757 428191 ~ 430258 (-) True G663235
TU757795 other upstream 279613 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 382781 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 459838 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 563515 3520790 ~ 3521623 (-) True G665797
TU758186 other upstream 710957 3668232 ~ 3670147 (-) True G665927

Expression Profile