RNA id: XM_036984548.1


Basic Information

Item Value
RNA id XM_036984548.1
length 4616
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC110531067
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 2110060 ~ 2200907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGctcagaaagagagggagggaggcagagagagcgcgagagcgagagagaggaggccgGGGATAAAGCACGGAGAAAGCCTGGATCGGTTCCGCTGTGCGCGTGCAGATGTGTACCGTATACAAGGCAACGGCGCGTGAACTTGAGGAGTTTTATTTGGTTCAAGACAAACCGGACATCTCCTCCGGAGAGGACTGAAGGGGGACTCACCTGGTTGCTACGGAGACAGTTTTAATATTTTAATCAGTTACCAAGCATCACCATGCCGTCCAACACTACCACACTGCCACCATCAGAGGACCCCACTACACACATGAGTGAAGACAGAGCGGTCCATGTGGGCCCAGAGGAGGGGAGTTTAGCCAGCCCACCCGCACTCTGCAGAGTTGATAGACCCAACAGACAACACAACCACACTCTTTCTgactcgTGTGAGATGGCACCCCCCACACCCCCAGAGGAAGTTGACCCCTCCCCTCGCAGAAAACGTGGCAGGCGGAAAATGGAGCCTCTGGAGCCGAAGGACCCCAACATGGAGggggaAGGCAGCAGGCTGCGCAGAAGGCCGGTTCCCAGAGAGACCTTTCAGGCTGGAgatcctttttacatcagcaggagacagagagacaagtggATCAACTGCTGGagtagagagGCTGAAATGCGGGCCCACCAAGAGGATGTGATGAGCGTGATGGAGAACCTATCAGAGCCAGAGTTTCAGAAGGAGGAGGAGCCAGCAGCCAGTTTAGCCACTCCCACACCCCAGCAACACACTGACCCCGCCTCTCCCACCATCGCCATGACGCCAGAGCCTGTTGCCAGGGGCCACCGGGCCACACCCAGAGATTCAGAGTACAAGGATGGTAGGGGGTTTGGTTTGGGCTGTCTGGTGTTCGGGAAGCTGCGTGGGTTCTCCTGGTGGCCTGGGCGCATCGTCTCCTGGGTGATGAGTGGGAGGAGCCGTGCAGCAGAGGGAACACGCTGGGTCATGTGGTTCGGAGACGGGAAGTTCTCTGTGgtgtgtgtAGAGAAGTTGATGCCGCTGAGCTCCTTCTCCTCAGCCTTCCACCAGCCCACCTACAACAAACAGCCCATGTACAGGAGGGCCATATATGAGgcactacaggtggcGAGCAAGCGTGCCGGCAAGCCTCTCCCCTcttgtgatggtggtgatgatgcagAGGGTGGGGGGGCGGAGCTACAGAAGCAGAACAGGAAGTTGATAGAATGGGCCATGACAGGCTTCCTGCCCAGCGGACCTCAGAGTCTGGACCCCCCtgatgAAGAGAGACACCCATATAAGGACGTGTATCCTGAGATGTGGGTGGAGCCAGAGGAAGCTTACACCCCGCCCCCTCCGACGAAGAGGCCCCGCAAGAACGTTGCTGAGAAACCCAAGATCAGAGAGGTCATCGATGAGGGGACTagagAGAGACTCATCCAAGAGATCAGACAGAAGACCAGGAACATGGAAGatatcTGTATCTCCTGTGGTAGCCTCAACGTCTCTCTGGAACACCCTCTCTTCATCGGAGCCATGTGTCAGAGCTGCAAGaaCTGTTTCTTGGAGTGTGCGTACCAATACGATGATGATGGATACCAGTCGTACTGCACTATCTGCTGTGGAGGACGGGAGGTCTTGATGTGTGGAAACAACAACTGCTGCAGgtgtttCTGTGTGGAGTGTGTGGATCTTTTGGTGGGTTTGGGTTCGGCGTCAGCTGCGATCAGAGAGGACCCCTGGAACTGCTACATGTgtgaaacacacaacacacacgggTTACTACGACGACGCGACGACTGGCCGTCACGACTACAGGTGTTCTTCGCTAACAACCATGAACAGGAATTTGAGGCAGCCAGGTTGTACCCTCCTGTAGCAGCTGAGAGGAGACAGCCAATCAGAGTCCTCTCTCTGTTCGACGGTATCGCCACAGgtctgttgGTGCTCAGGGACCTAGGTATTCAGGTGGACAGGTACGTGGCTTCAGAGGTGTGTGAGGATTCTATCACCGTGGGGATCGTACGTCACCATGGTTCCATCATGTATGTTGGAGACGTACGCAACGTCACGCGCAAACACATCCAGGACTGGGGTCCGTTTGACCTGGTGATTGGAGGAAGTCCCTGTAATGATCTGTCCATCGTCAACCCCGCCAGGAAGGGACTCTTCGAGGGTACTGGACGGCTGTTCTTTGAGTTTTACCGGCTGCTCCACGAGGCCCGTCCCAAACCAGACGACCACCGACCATTCTTCTGGCTCTTTGAGAACGTCGTTGCCATGGGGATCAGCGACAAGAGAGACATCTCACGATTCCTCgagtGTAACCCAGTGATGATCGATGCCAAAGAAGTGTCTGCTGCTCACCGCGCCAGATACTTTTGGGGAAACCTGCCGGGCATGGGGCGTCCTCTCACAGCCATGGTGAATGATAGATTGGAACTACAAGACTGTCTGGAGCACGGACGCACAGCCAAGTTTGGGAAGGTGCGTACAATAACAACGCGTTCTAACTCAGTGAAGCAGGGGAAGGATCAACACTTCCCTGTTTACATGGACAACAAGGAGGACATACTCTGGTGTACTGAGATGGAGagGGTTTTTGGGTTCCCGGTCCACTACACAGATGTGTCCAACATGAGTCGTCTCTCCAGACAGCGTCTGTTGGGGCGGTCTTGGAGCGTTCCAGTCATACGACACCTCTTCGCCCCACTCAAAGAGTACTTCGCCTgcaactaatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacctcaactgAAAGAGTTCTCAGCCTGGAGCCCAGCCCATGACCCACAGGCCGATGCCCAACCAGAAAGGTTCCAGCCCCGCCCCGGTGTTAACCAATCACAAGCCAGGATACGCCCCAACCCTGGTGCTAACCAATCACAAACTAAACCTGTTATCCAGCCACAAAACAATACTCCGACAACATGGACTGTCTCTCTTCCAGTCTCTCTGTCACTCACACCTCAGATTCCATGGTGCTAgttgacaaaggtgcttcaacactcAGTGGTGCTTAATCTCCTTTACATCTCCCTCCTGTTAATCAAATCTAtggtgctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaccaggtCTTTGTTCAGTAGTTTCATTAGTTTGCAGTGTTTCTTTCTCTTCAGGTAGCagcttgttttctactgtctctaagTGCAGCGTAGcagaggggttagaggtcaggggttagaggttagtgtTCTACAGTTAAGCGTTGTGTAGGTAGTTCAGCATGACGAGTAACTTGCCTGAGACCTGAGGACTCAGGTTAGCGCCCAGAGAGAGCCTAGTCTTTAGTTCAGTGGGCTAACATGGTCTCGTGGCGCACAGACAATCCAGGTTTACACAGCAGTCAGTCACACTAGTGGGTTACACAgtttgctgcacacacacacacacacacatacgcacgcacgcacacacacacacacacatatacacacacacacagttgtgatGAGCTGTTTCCAACCCTGTGCTCCGTCATGCGCAAACACAGCTGTCTCCCATGGTGCAGTGGGGCGTTATGTCATAAGGTGCTTGCTTACGGTAACATGGTTACTATGGGTTACTATCAATTACTATCTGTCAGTATAGTGAGTGGTCTGTTGTACTgtagggggaggggcttgggggCAGGGGGTGGGATGTTTATTTGTTGTTTGATGTGATTTACTGGTGGTTATTTGATTGACAGGTGATAAGTCAACGAGGGTATCACCCGTTGAGAGTTTTAACAGGGTGGAGTCCGAGCAGGctgtcacacacagacatgcacgctCCTCTCACAGGTGTAATGAAATGTGTTTTGAAGAGGAAGGACCGGTGATGTTTCAAAAGGTgctaaaatgaaaaaaaaatagaatatATCAGATCTATAGTTAGAATAAGGTTGTCTTTCCAATGGCTGTATTTAGTTGTGGTAGAGAGTCAAAGGCAATATTATGTACTCTTGTATCTTGTATGCAGAATAACTAAAGCAGAATAACTAAAGGCATTTTAACTTTGTACTTGAACCTGTAATGAATAAAGGATTCATGTTTTAGCCTAGAGATAATGTCTGGCACACTGATCGTGTATTATGGTACATATACCTTCCTCCTCCCCAGCAAAccgggaacattcccagaacgTTAGCTCAGATTCCCATTAAGTTCTAGTTAGGGTTTAATGTAACATTAGGATGATatcatatatttatttatcaaatGTGTTTTAAGAGAACATTCCAAGGATATTTCATGTAACATTTAACAACCACAATAGAACATTCCCCAAAAGTTTGtatgtttgtataaaacatttgcaTGATGTTGCTAGAACGTTCCTATAAACATATGTAATGTGTtctttaaaaggttcccagaatgtttcattaggttgtgggaacagtctggtgggaacatcACAATATATATGTTCCAAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU756769 lncRNA downstream 15872 2093880 ~ 2094188 (-) True G664788
TU756763 lncRNA downstream 38473 2071263 ~ 2071587 (-) True G664782
TU756762 lncRNA downstream 38892 2070896 ~ 2071168 (-) True G664781
TU756759 lncRNA downstream 43760 2065804 ~ 2066300 (-) True G664778
TU756709 lncRNA downstream 44330 2064899 ~ 2065730 (-) True G664739
TU756848 lncRNA upstream 41221 2242128 ~ 2242820 (-) True G664864
TU756856 lncRNA upstream 49534 2250441 ~ 2252039 (-) True G664868
TU756857 lncRNA upstream 69175 2270082 ~ 2270739 (-) True G664869
TU756859 lncRNA upstream 78067 2278974 ~ 2279641 (-) True G664871
TU756860 lncRNA upstream 80551 2281458 ~ 2281838 (-) True G664872
XM_036984540.1 mRNA downstream 13228 2061698 ~ 2096832 (-) True LOC110529242
XM_036984544.1 mRNA downstream 13286 2061698 ~ 2096774 (-) False LOC110529242
XM_036984543.1 mRNA downstream 13287 2061698 ~ 2096773 (-) False LOC110529242
XM_036984541.1 mRNA downstream 13493 2061698 ~ 2096567 (-) False LOC110529242
XM_036984545.1 mRNA downstream 19694 2061698 ~ 2090366 (-) False LOC110529242
XM_036984555.1 mRNA upstream 33078 2233985 ~ 2278437 (-) True LOC110529239
XM_036984571.1 mRNA upstream 746108 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA upstream 755717 2956624 ~ 2956701 (-) True LOC118965659
XM_036984569.1 mRNA upstream 880305 3081212 ~ 3103346 (-) False ccm2
XM_036984568.1 mRNA upstream 880305 3081212 ~ 3120444 (-) True ccm2
TU756703 other downstream 115530 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 611489 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 671619 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 1679802 428191 ~ 430258 (-) True G663235
TU754858 other downstream 1723078 381322 ~ 386982 (-) False G663215
TU756738 other upstream 90495 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 1035981 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 1139149 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 1216206 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 1319883 3520790 ~ 3521623 (-) True G665797

Expression Profile