RNA id: TU756856


Basic Information

Item Value
RNA id TU756856
length 507
lncRNA type intronic
GC content 0.41
exon number 2
gene id G664868
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 2250441 ~ 2252039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatgtagtatTAAGGGGTCAGTATATAAAATGTAGGGGTCAGTacgtagaatgtaggggtcagtacgTAGAAtttaggggtcagtatgtagaatgtaggggtcagtgtgtAGAATGTTTTGGTCAGTATGTAGTTGTCACTATGTAGAATGTACAGGTcagaatgtagaatgtaggggtcagtatatagactTTAGGGGTCtgtatgtaggggtcagtatgtagaatgtaggggtcagtatgtaggggtcagtttattgaatgtaggggtcagtatgtagaatgtaggggtcagtatgtaggggtcagtacATAGAATGTACTGGTCAGTATTTAGAATGTAGAGGTCActatatagaatgtaggggtcagtatatagaatgtaggggtcagtatgtagaatgtagcgGTCAGTAtataggggtcagtatgtagaatgttgtggtcagtatatagaatgtaggggtccgtatgtagaatgtaggggtcagtatgtagattGTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU756848 lncRNA downstream 7621 2242128 ~ 2242820 (-) True G664864
TU756791 lncRNA downstream 105378 2144454 ~ 2145063 (-) True G664809
TU756782 lncRNA downstream 128982 2120414 ~ 2121459 (-) True G664800
TU756780 lncRNA downstream 131011 2117408 ~ 2119430 (-) True G664798
TU756777 lncRNA downstream 137026 2112605 ~ 2113415 (-) True G664796
TU756857 lncRNA upstream 18043 2270082 ~ 2270739 (-) True G664869
TU756859 lncRNA upstream 26935 2278974 ~ 2279641 (-) True G664871
TU756860 lncRNA upstream 29419 2281458 ~ 2281838 (-) True G664872
TU756861 lncRNA upstream 45243 2297282 ~ 2298299 (-) True G664873
TU756864 lncRNA upstream 47438 2299477 ~ 2312627 (-) False G664874
XM_036984548.1 mRNA downstream 49534 2110060 ~ 2200907 (-) False LOC110531067
XM_036984549.1 mRNA downstream 49534 2110060 ~ 2200907 (-) False LOC110531067
XM_036984550.1 mRNA downstream 49534 2110060 ~ 2200907 (-) True LOC110531067
XM_036984551.1 mRNA downstream 49535 2110060 ~ 2200906 (-) False LOC110531067
XM_036984571.1 mRNA upstream 694976 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA upstream 704585 2956624 ~ 2956701 (-) True LOC118965659
XM_036984569.1 mRNA upstream 829173 3081212 ~ 3103346 (-) False ccm2
XM_036984568.1 mRNA upstream 829173 3081212 ~ 3120444 (-) True ccm2
XM_036984577.1 mRNA upstream 1461738 3713777 ~ 3823317 (-) False LOC118965483
TU756703 other downstream 255911 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 751870 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 812000 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 1820183 428191 ~ 430258 (-) True G663235
TU754858 other downstream 1863459 381322 ~ 386982 (-) False G663215
TU756738 other upstream 39363 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 984849 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 1088017 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 1165074 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 1268751 3520790 ~ 3521623 (-) True G665797

Expression Profile