RNA id: XM_036984543.1


Basic Information

Item Value
RNA id XM_036984543.1
length 1143
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110529242
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 2061698 ~ 2096832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATACGAGGTGATACAGTTTCGCTGTGACGCAGGTCAAACCTTGCCACTGGGACCGTATGGGTGCCACGCAGGCGCACTTGGGCAGACAGCAGAGCTGGTCGACAGGTATCTGAGTGGACCGACTGTAGCAACGCAACTAGCACAGACCGGACAGGCTCGGAACACCGCATCAAATAGAGGCTCTTCACACGAGACAGTTGATGGCGGTGAATGTATTCTCCATCTCTTCGGCTCTGGAGAACCTGAGTCGTCATGAGATGCTGTCCTGGGTCAACGACTCTCTACGGCTCACCTACACCAAGATAGAACAACTGTGTTCAGgtgcaGTGTATTGTCAGTTCATGGACATGTTGTTCCCTGGCTGTGTCCTGCTGAAGAAGGTGAAGTTCGCAGCCCGGCTGGAACATGAGTTCATCAACAACTTCAAGGTCCTACAGGCCTCCTTCAAGAGAATGGGCGTagacaagatcATCCCAGTAGAGAGGCTGGTGAAGGGGAGGTTTCAGGATAACTTTGAGTTCATCCAATGGTTTAAGAAGTTTTTTGATGCCAACTACGATGGGAAGGAGTATGACCCTGTGGCCACACGCCAGGGGCAGGAGGGCGCCCCCTCACCCAACCCAGGCCCCCAGAGGACATCTCCCACAGTGACCAAGACAGCCCCCTCCAGGCAGATAAACTCTGCCTCCATCCGCAGGGCGATGCCCACTAGAGCAACCAGACCATCAGACGCTGAGATCCTAGAACTGAaccagcagatgttggATCTGAAGCTGACGGTGGATggtctggagaaagagagagatttctACTTCAGTAAGCTGAGAGACATCGAGTTGATCTGTCAGGAGAATGAGACCAACGCCAGCCCAACACTCTCCAAGATCATGGATATACTGTACGCTACTgagGGCGAGGTTGAGAAAGAGAATACCTTCTCAGACAACTTACCTGATCACTAAAGgATGGCTTCATGGCGCCAGAGTACGACAAGGTGGAGGAGGCGCCACAGGGAGACCAAGAAGAATACTAAACACACCTCCTTTCTCTGCACCACTCCACGCCTCCTTTCTCTGCACCACTCCACGCCTCCTTTCTCTGCACCACTCCACGCCTCCTTTCTCTGCACCACTCCACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU756707 lncRNA downstream 54544 2006732 ~ 2007154 (-) True G664737
TU756697 lncRNA downstream 74401 1987041 ~ 1987297 (-) True G664729
TU756641 lncRNA downstream 86122 1971220 ~ 1975576 (-) True LOC110529244
TU756642 lncRNA downstream 87639 1968322 ~ 1974059 (-) False LOC110529244
TU756693 lncRNA downstream 95071 1966402 ~ 1966627 (-) True G664725
TU756777 lncRNA upstream 15832 2112605 ~ 2113415 (-) True G664796
TU756780 lncRNA upstream 20635 2117408 ~ 2119430 (-) True G664798
TU756782 lncRNA upstream 23641 2120414 ~ 2121459 (-) True G664800
TU756791 lncRNA upstream 47681 2144454 ~ 2145063 (-) True G664809
TU756848 lncRNA upstream 145355 2242128 ~ 2242820 (-) True G664864
XM_036984538.1 mRNA downstream 40072 1976310 ~ 2021626 (-) False selenoi
XR_005052757.1 mRNA downstream 40072 1976310 ~ 2021626 (-) True selenoi
XR_002474348.2 mRNA downstream 91234 1968290 ~ 1970464 (-) False LOC110529244
XM_036984537.1 mRNA downstream 233304 1807585 ~ 1828394 (-) True tbx18
XM_036984534.1 mRNA downstream 562998 1479450 ~ 1498700 (-) False armc1l
XM_036984552.1 mRNA upstream 13287 2110060 ~ 2199868 (-) False LOC110531067
XM_036984551.1 mRNA upstream 13287 2110060 ~ 2200906 (-) False LOC110531067
XM_036984554.1 mRNA upstream 13287 2110060 ~ 2200906 (-) False LOC110531067
XM_036984548.1 mRNA upstream 13287 2110060 ~ 2200907 (-) False LOC110531067
XM_036984549.1 mRNA upstream 13287 2110060 ~ 2200907 (-) False LOC110531067
TU756703 other downstream 67168 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 563127 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 623257 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 1631440 428191 ~ 430258 (-) True G663235
TU754858 other downstream 1674716 381322 ~ 386982 (-) False G663215
TU756738 other upstream 194629 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 1140115 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 1243283 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 1320340 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 1424017 3520790 ~ 3521623 (-) True G665797

Expression Profile