RNA id: TU756642


Basic Information

Item Value
RNA id TU756642
length 5738
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC110529244
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 1968290 ~ 1975576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagaaaaaccctggaatgagtaggtgtgtccaaacttgtgactggtactgtatatgtatgtatatgatggtgtgaaTAGATGTTATGGACAGTATATGTGAGTAGagaaggtgtgtacagcagtagttaaaAACGATGAGCTATGACtagaatgcagtgtgtgtgtgtgtgtatgaaatttcttatttacaatgacggcctaccagggaacagtgggttaactgccttgttcaggggcagaacgacagatttttactttgtcagttcggggattccaTTTAGCAACCTtctcagttactggcccaatgctctaatcactaggctacctgtggctCTATGGTGTTTGGTAAGGTGGagttgatatgatccttaactagcctctcaaagcattttatgatgacagaagtgagtgctatggggcaatagtcatttagtttccTTCCCTTTCTTTGGTACCGGAACAATGGTGGACaccttgaagcaagtggggacagcagactgggataggtagAGATTGaacatgtccgtaaacactccagccagctagTCTGAACATGCTTTGAGGATACGgccatctgggccagcagccttaaGAGGGTTAAATGTCATGTctgacacagagaaagagagctcaTACTCCTCGTTGGCCCACATCAACGGCACTGTGTTTTCCTTGAAGAGGGAgcaggtgtttagcttgtccgggagtaAGGTGTCAGTGACCGACATGGCTGGAGACCCTATCACATAtgttttcagttttgtgcgaatgctgccgtCTCCACGGTTATTTGTTTTGGATAAGTTCTAATCGTAACAGTGGTAACCTCTATGCACTTCCTGGTGAACCCAGTCAGCAAGTCAGTTTATATGTCATTGAATCCAGTCACCAAGTGTTTACGTCAACGTTGttcgattggtcagaccaatgTCGAACAATCGCAGTCAGgtacaggtacttcctgtttaagtttctacctataggaagggaggagcagaagggaggcgtgatctgatttgccaaaggcaGGGCGTGGGAGGGGCTTGTAACCGTCCTGGGAGGGGGAGTAGCAATGGTCAAGAATTCTTGATTAGCGAGTAGCgcaggtgatgttttgataaaaCTTCAGTGGCATTTTCCTCAGATTCGCTTTATTGAAGCTACAATAAAGGCGGCCTCGGGATATGCAATTTCCAGTTGGTACAAAGTccagtgtttattttatttatttttatttcacctttatttaaccaggtaggacagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagcgcaacacaaacaacaacagatgaaataaacacagtcaataacacaatagtaaaagtctatatacagtgagtgcaaatgaggtaggataaatGACGTAAGGAAAAAAATAgcccatagtggcgaaataattacaatttagcaattaaacaccggagtgatagatgagcagaagatgaatgtgcaagtagagatactggggtgcaaaggagcaaataaATAACACTGGGataaggtagttgggtgggcaatttacagatgggctatgtacaggtgcaataatctgtaagctgctctgacagctgatgtctatagttagtgagggagatatgaggcagcagagaactggaaggagaggcggccaaaggtgGAATTGGCTTTTggagtgaccagtgagatatacctgctggagcgtgtgctacgggtgggtgctgctatggtgaccagtgagctgagataaggggggaatttacctagcagagacttatagatgacctggagccagtgggtttggtgacgaatgtgaagcgaaggccagccaacgagagcatacaggtcgcggtggtgggtagtatgtggggctttggtgacaaaacagatggcactgtgatcgactacatccagtttgttggaggctattttatagatgacatcaccaaagtcaaggatcggttggATTGTCAATTTTACCAGGGTATGttttgcagcatgagtgaaggatgctttcttacgaaataggaagccgattctagatttaattttggattggagatgcttaatgtgagtctggaaggagagtttacagtccaaccagacacctaggtatttgtagttgtccacatattctaagtcagaaccgtccagagtagtgatgctagacgggcgggcttttcgttttacttgcatttaaaagcagttggaggccacggaaggagtgttgtatgcaagctcgtctggaggttagttaagtgtccaaagaaggaccaaaagtatacagaatggtgtcgttccAGTGTAATTCCTTGAGCCGTCACGGTCTCAGCTTGACGGGGAATATGATGTCACTGATGCCTCTCTGGAAGGAGAGCCCTGATCTTGTCTTAAgttattgtccagggactgaacattaggaAGTAATATTTCAGGGAAGTCTTATTTGTGATGGAAATGCGGGTGAGTGATCTAATAACTAAATGTTATTTTTTGGCAGTAGGTAATAATGCAAGAAACCTGAGAAAATAATGTAAGATATAACACACAAAAACAACTATACTGTAAAGTTggctaggagctagaagcagGGTGACCATGTCTGTTGGCGCCATCTTATTTATGACTTTGTGGTTGTGGTAACTAGTGAAGACCAGGCACAACTCTGATATATAagttttttttctcaaagttgctggAATGCCATGTgccctacttatatcagtacactcgtaacgACCTAATCATTTCAAAACTTGTTCGATGAAATAAGCCATTAAATATGTTAACGAAATTGGccactcattgacctccatacaaaaactcctttCTTGGTGAGCGACAAATACATAAAAACGCCCCCTGCTGGAGAAGTCAGACTTTAGGCCCTGTTATCTCTCTTGCTTCAAGTCTTCCTCCTTTTGTGTCCtaaatgcaccctattccttataataTAGTGCACGACCAGGGCGCTTGGCTCAaatcaaaaggagtgcactatacagggaatagtgtgccatttgggatcatTCCTTAGCGTGATAGATCTAACGCCTGGATATGTATTTTAAGTATCAgctcacatacactatatatacaaaagtatgtggacatccctttaaattagtggattcggctatttcagccacacccgttgctgacacatcgagcacaccgccatgcaatctccatagacaaacactggcagtagaatggccttcctgaagagctcagtgactttcaacatggcaccatcataggataccacctttccaacaagtcggtTTGTCAAATgtgtgccctgctagagctgcctctgtcaactgtaaatgctgttaatgtgaagtgaaaacgtctaggagcaacaacggctcagctgtgaagtggtaggccacatcaGCTCACCGaaagggaccgccgagtgctgaagcacatagaGCGTAAAaattctgtcctcggttgcaacactcactacagagttccaaactgcctctggaagcaacatcagcacaataactgttcggctggagcttcatgaaattggtttccatggcagagcagccgcacacaagcctaagatcaccatgtgcaatgtcaagcgtcggctggagtggtgtaaaggtcacggacattggactctggagcagtggaatctCGTTCtttggagtgataaatcacgcttcaccatcaggCAGTCCAATCAACAAagctgggtttggcagatgccagaagaacgctacctgcccgaatgcatagtgccaactgtaaagtttggtggagaaggaataatggtctggggctgtttttcacggtccgggctaggccccttagttccagtgaagggaaatcttaacgctacagcatacaatgacattctagacgattctgtgcttccaactttgtagcaacagttttggggaaggccctttactTTTTCAGCATGATCAAACAccgttgggatgaattggaacgctgactgcgagccagacctaatcgcccaacatcagtgcccaacctcactaattctcttgtagctgaatggaagaaagtccctgcagcaatgttaaaatatctagtggaaagcctccccagaagagtggaggctgttatagcagcaaatacccatgattctggaatgagatgttcgacgagcagatgtccacatacttttggtcatgtagtgtaggttATAGCAATTTGTCAGTCCATGACACAGTCCATCACACAGTCCATCACACAGTCCATCACACAGTCCATCACACAGTCCTTGACGTGACACAAACACTGATTGTTGCCTCGCCTTAGCTATGGAACGCGCCTCGAGTTTCATCAGGCTTCTTGCCATGTTTAAAAGAACTGAGGACTTGAAATTAGGGAAACATTTTTGAACGGTCATTTAACTCGTATTTCCAAGTCGGAAACTTTCAGGAGCTCGGACATTCTGACCTAAAGATCACGGACGCCCTGATTTTACCTTTTattcctgagttcccagttgtctggaAAGCACCATTATACCCATATCTAGTGATGACTTCACTGGTGACGTCATTACCGGTATCTAGTGGTGACGTCATTACCGGTATCCAGTGGAGACGTCATTACCGGTATCCAGTGGCGACGTCATTACCGGTATCCAGTGGCGACGTCATTACCGGTATCCAGTGGCGACGTCATTACCGGTATCCAGTGGCGACGTCATTACCGGTATCTAGTCGTGACGTCATTACCGGAATCTAGTCATGACGTCATTACCGGTATCTAGTGGTGACTTCACTTCCCAGTGTTTGTTTATCAATGGGCGGATTTGATTATGCTAAGCCACGTGGCACCAGTCTATGGTCTTCTTTCACCGCGAATGAAGCACCCTTCTCAAATCCAACAGTAATCTACAAATCCAACAGTAATCTACGAATCCAACAATCTACAAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGAATCCAACAGTAATCTACGCAGCTCTGCGattttgtcaacaaggcagcatggtgtaTCATACATCTCTTTTCCATAAAGTATTTTTTGTTCATTGGGAAGACCGAAAGCGttttattttcaatcaaaatGCAATCCCTTTTGCCTGTGAAACCACAGAATCCTAGTAATTACAACACGTGCTTAATTacatcacttttgttttgagcagATGTCGCCTGTGGTTTTAAACGATAAGGGTCTTGTCCGTCTGAACGTCTGGGAGACCAGGTAGGGTCTAGTCCATCGGAAGGTCTCGGAGACCAGGTAGGGTTTAGTCCATCTGAAggctccctatgtagtgcactactttagctcTATGAGGCACCCTATGTGTCTGGAAGTTGGGTATAGAAAGGGATTTGAGGTCCATTGGACCCTCTCTACTAATGATCCTGGTCATCAAGTCTCCTCCATCACTGCTAACGACTCTGGATGAAACCGTTAATCTGTGACTCTGTCTGTCCAGAGCTCTTTATTGTcatttacagctgtgagtttgtCTGTCATGTGACGCGGCTGCAGAGCACCTGataatgatgattatgatgatgtaAAGAAACAAAGGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU756693 lncRNA downstream 1695 1966402 ~ 1966627 (-) True G664725
TU756679 lncRNA downstream 17587 1950505 ~ 1950735 (-) True G664711
TU756678 lncRNA downstream 21071 1947036 ~ 1947251 (-) True G664710
TU756677 lncRNA downstream 21462 1946511 ~ 1946860 (-) True G664709
TU756661 lncRNA downstream 46458 1921622 ~ 1921864 (-) True G664693
TU756697 lncRNA upstream 12982 1987041 ~ 1987297 (-) True G664729
TU756707 lncRNA upstream 32673 2006732 ~ 2007154 (-) True G664737
TU756710 lncRNA upstream 34329 2008388 ~ 2065730 (-) False G664739
TU756709 lncRNA upstream 90840 2064899 ~ 2065730 (-) True G664739
TU756759 lncRNA upstream 91745 2065804 ~ 2066300 (-) True G664778
XM_036984537.1 mRNA downstream 139928 1807585 ~ 1828394 (-) True tbx18
XM_036984534.1 mRNA downstream 469622 1479450 ~ 1498700 (-) False armc1l
XM_036984536.1 mRNA downstream 469766 1479450 ~ 1498556 (-) False armc1l
XM_036986813.1 mRNA downstream 504655 1423487 ~ 1463667 (-) False LOC110518775
XM_036986811.1 mRNA downstream 543331 1423487 ~ 1424991 (-) True LOC118965590
XM_036984538.1 mRNA upstream 2251 1976310 ~ 2021626 (-) False selenoi
XR_005052757.1 mRNA upstream 2251 1976310 ~ 2021626 (-) True selenoi
XM_036984545.1 mRNA upstream 87639 2061698 ~ 2090366 (-) False LOC110529242
XM_036984541.1 mRNA upstream 87639 2061698 ~ 2096567 (-) False LOC110529242
XM_036984543.1 mRNA upstream 87639 2061698 ~ 2096773 (-) False LOC110529242
TU755950 other downstream 469751 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 529881 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 1538064 428191 ~ 430258 (-) True G663235
TU754858 other downstream 1581340 381322 ~ 386982 (-) False G663215
TU754654 other downstream 1717268 204128 ~ 251054 (-) False hmgn3
TU756703 other upstream 19830 1993889 ~ 1994530 (-) True G664733
TU756738 other upstream 317343 2291402 ~ 2350981 (-) True G664763
TU757795 other upstream 1262829 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 1365997 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 1443054 3417113 ~ 3418288 (-) True G665718

Expression Profile