RNA id: XM_036984586.1


Basic Information

Item Value
RNA id XM_036984586.1
length 1950
RNA type mRNA
GC content 0.48
exon number 5
gene id baalcb
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 4037616 ~ 4047801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCGTTATTGGTCCAGTGGTTCTACTGGCTCTGGTGGAAGGCTACTCGCTCTGAAAGGAGGGATGCgagtaggagaggaggtcagGCGGAAAAAGAGGAACCCGGTGGATGTCCGTGGATAGCAAAACCCCTCAGGCTCCCTTCCCTGACAGACTGATATGTCATTGGACCAATGGGGTGTTGATGATGCAGGCGCAGAGGTTGGCCAGGTGAGATGTAAGACCCGCCCACTGCGTGTCCTACTTCACCTGCAGAGGAACAGGAATCTGTAGAAAAAAAGCCCCCAGCAATTCTGCTGAAACAAATGAACTGAAGTGATTTTTAAGAAAATGGCGGAAAATCGAACAAATGGATACTGGTAGTGAAATGCCACTACAAACCACCTCAGCCTTCCCCTTGAGAGAGGATTGCATCTCCTGCTGATTTCTGGACATCTGGCGGATTTTCTTTTCTTAGATCTCGTGCATTTGGTACATTGCAAtcaaccccaggcatcctgctggcCCACCAACCCATTAGACCAAGAGGACATCTTGATCTCCTGTTGACTCACCAACCCATTAGACCAAGTAGACATCCCGATCTCCTGTTGACTCACCAACCCATTAGAacaaaggtcagaggtcaacatCAGAGTTAACATAGGGTTACAACATCCGGGCTTACGAGTCCCGGCAAGGGCTATCTCTTCAAGAGAGTGGGATTCCAAATCACCTCTGAAACACAGAATCCACAGCTCTGATCCCTCCCTTCTCTGCGCCCGCTGAGAGGagTAGGTGGAACTATAGGAGGCACCATGGGGTGTGGTGGCAGCAGGACTGATGTTCTGGAGCCCAGGTACCTGGAGAGCTGGACCAAGGAAACAGAATCTACCTGGCTGACCAGTACAGACACAGACATCCCACTCTCCTCCATACAGAGTATGGATATCCCTTCTGAGAACTCATCTGAAAGCTTTGTCTCTGAGAAAACCATCACACCTGATGCAGATTTCTTTGAAGACGGCTTGCCTGCCCCAGCCCAGGCCTATCTACAGGTGTGCTCTGACATGTCTGAAGCAGGACTGAACAATGTAAAGCTGAGTGCCCACCCTGCAATACTGCCCTCCCACAACCAGGCGCTTCAACCGTCACCTGTTACAGTACAGAGAAGAAGCGTCCTACGCACTGAGGAAATAACTAAATGGCAAGACAACAGGATGTCCACGAAGCAGGTAACCATCACAGTGACACAGAGCATCAGACACGTGGACAAGAGTGGGAAAATTAAGGAGAAGTCCCTCACCACCTTCGAGGTCATGAAGCCCATGGAGGGCCTGAAGGACGTGGCTGAAGGACGTAGTAGGAACATTAGGGAATAACACTGTGATACACCGAGGTCTGAGGGGGTAACAGGGGACAAAGCTAATGGCAGAACGTGGTTTGGAAAGACAATGATAGAACGTGGTTTGGAAAATCAATGGCAGAACGTGGTTTGGAAAGACAATGGCAGAACGTGGTTTGGAAAGACAATGGCAGAACGTGGTATGGAAAGACAATGACAGAACGTGGTTTGGAAAATCAATGGCAGAACGTGGTTTGGAAAGACAATGACAAGAGTGTGGTTTGGAAAGACAATGGCAGAACGTGGTTTGGAAAGACAATGAACGCTGTGAGAAAGAATGTATTGCTGAATGGACTTTCCTTTGAGGGGGAGAGAAACAATGATACCAAAATGCGGTTTGAGGttcataaaaatgaaaaaaaagatAACGATTTGATTATAGAGATAGAGGGTTTGAATCCGTGGCACAATTGGTCCGCTATCTCTACCTGGGACCAGACCTGATAAACGAGATACCTCTACGGGCCTGACACCAAATGCTGTCAGGATGAGAGAGTTTGTGACTTTGTCTAACGAAGATGAATGCTTTTTATAGGCTGGGCTTGGGACcaagatgtaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU759454 lncRNA downstream 54958 3981740 ~ 3982658 (-) True G666917
TU759450 lncRNA downstream 62389 3968807 ~ 3975227 (-) True G666913
TU759435 lncRNA downstream 92752 3943872 ~ 3944864 (-) True G666900
TU759419 lncRNA downstream 109125 3924379 ~ 3928491 (-) True G666890
TU759416 lncRNA downstream 111405 3924104 ~ 3926211 (-) True G666889
TU759545 lncRNA upstream 58064 4105865 ~ 4106256 (-) True G666973
TU759553 lncRNA upstream 73379 4121180 ~ 4123523 (-) True G666979
TU759555 lncRNA upstream 76550 4124351 ~ 4138041 (-) True G666980
TU759603 lncRNA upstream 159915 4207716 ~ 4208889 (-) True G667019
TU759612 lncRNA upstream 195948 4243749 ~ 4244710 (-) True G667024
XM_036984585.1 mRNA downstream 47508 3977332 ~ 3990108 (-) True LOC110529266
XM_036984580.1 mRNA downstream 78266 3879833 ~ 3959350 (-) False LOC110529264
XM_036984582.1 mRNA downstream 78266 3879833 ~ 3959350 (-) False LOC110529264
XM_036984583.1 mRNA downstream 78266 3879833 ~ 3959350 (-) True LOC110529264
XM_036984577.1 mRNA downstream 214299 3713777 ~ 3823317 (-) False LOC118965483
XM_036984588.1 mRNA upstream 232204 4280005 ~ 4344916 (-) False LOC110529162
XM_036984587.1 mRNA upstream 232204 4280005 ~ 4358156 (-) False LOC110529162
XM_036984589.1 mRNA upstream 238798 4286599 ~ 4358156 (-) False LOC110529162
XM_036984594.1 mRNA upstream 534746 4582547 ~ 4589667 (-) False LOC110529271
XM_036984593.1 mRNA upstream 534746 4582547 ~ 4590493 (-) False LOC110529271
TU758186 other downstream 367469 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 515993 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 619328 3417113 ~ 3418288 (-) True G665718
TU757859 other downstream 696656 3340056 ~ 3340960 (-) True G665655
TU757795 other downstream 797564 3236888 ~ 3240052 (-) True G665603
TU759716 other upstream 441005 4488806 ~ 4490220 (-) True G667122
TU760267 other upstream 1501002 5548803 ~ 5551245 (-) True znf395b
TU761008 other upstream 2158757 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 2232395 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 2738731 6786532 ~ 6794187 (-) True wdr21

Expression Profile