XLOC_012938 (si:ch211-195m9.3)


Basic Information

Item Value
gene id XLOC_012938
gene name si:ch211-195m9.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 35128685 ~ 35148310 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025773
CTGAGCCTGGAAGTGTAAAGCAAGGAATAGTTACACACCCACCTACACTGGATACAATGTTGACAGAGCAACGAGGGAAAGTACTCTATGACTGTGGAATCTGCCATCATGACAGGGGGAAGCAAAACACAGGTTTTAGTGGCGAGATGGAAGGCAGCAATAACCTGCACTGTTGTGGAAATCAGTCTTACAACATCTTAAGAAGCTCCTGCTGCAATGACCCTTACCAAACAACGAATCATATATGTTGTGGTGATGTATtgctgaaaaaacaacaaaagaagaaaTGTTGTGGCAAGGAACTATTTGACACACTGACCGAGTGCTGCTGTGACCAAGACCTAGTCTTAGCAATAAAGCCCAAAAGTGATCCTTGCTGTCAGACTAAACCAGTTGAAAAATCTGAATCCTCACAATGCTCTCAGGCCTCTGGAGCGCACAACAATATTGCAGAGAATTGTGGATCCTATGATCCTCAGACACATATTTGTTGCTCAGGGTTTCTGTACAGGAAGGCATCAGAACTTACTAAGTGCTGCGGAAAACACCTTTACACTTTCTCCGAGGGAAACGTTCTGTGTTGTAATGGAATCTTGCATCGAGATATGCCTGAGAAGTCAGAATGTATTGGAGGTGTTGTATATTCTCCAGGAAACACTACATGCCATCTGCCTGTTCGTCCCCAAATTGGCGAGCACTGTTGTGGAAATCAAACCTTCGATCCTCTTATCCATATTTGCTGTAATGGACACAGACACAACAAGAAAAATGGTAATGTCTGTTGTGGTTCCAAAGTCTATGACCACCACAACACGTCCTTGAGGTGCTGCTCTGATCATCTTTACAGTACACCTAGTGGAGAAGTAGAGTGCTGTGGAAACCACTTGCTGGAAAAAAATCAAATTTGCTGTTCCTCCTCAACCCTGGCCGTGAAATATTTCACCAAATTGAATC
>TCONS_00025774
AGCAACGAGGGAAAGTACTCTATGACTGTGGAATCTGCCATCATGACAGGGGGAAGCAAAACACAGGTTTTAGTGGCGAGATGGAAGGCAGCAATAACCTGCACTGTTGTGGAAATCAGTCTTACAACATCTTAAGAAGCTCCTGCTGCAATGGTAATTTAACTCTGGGATTAAGCCAGCTTGTGACTTACTGCTGTGGTTCTGTACCCTACAATCCCCTAAATGAGATTTGCTGTAGTGGCAGTATTTTCATTCGAACTAGTGCTCACACTAAATGCTGTGGCAAGGACCCTTACCAAACAACGAATCATATATGTTGTGGTGATGTATtgctgaaaaaacaacaaaagaagaaaTGTTGTGGCAAGGAACTATTTGACACACTGACCGAGTGCTGCTGTGACCAAGACCTAGTCTTAGCAATAAAGCCCAAAAGTGATCCTTGCTGTCAGACTAAACCAGTTGAAAAATCTGAATCCTCACAATGCTCTCAGGCCTCTGGAGCGCACAACAATATTGCAGGTAAATATCCTCGTAGTCTAATCTATTTGTTACTAAAAGCAAGTCTAGTTCCCTTCTTAGTTGGCATGttcacatttgttttgtttttaattaaatgtttttgcaaGAAAATGCTGACAAGTGGCCCTTTTCATCAAAAAAAGTGTTCAGTGTTCTGACGGCATGTCACCTCAAGTATACTTACATTTCCGATAGACTGCTGTTATTAATTGGTGACTGTTGCTGAGTAAATATTAATGCTAGCTATGGTAATTAGGTAATAGTTTTGTTAACAACGCAAAGCAGAGAGTTGTTGTATAGACTGGAGGGCTTTATTTtgcgaaaac
>TCONS_00025775
aaaccacCAGAAACACAGGTTTTAGTGGCGAGATGGAAGGCAGCAATAACCTGCACTGTTGTGGAAATCAGTCTTACAACATCTTAAGAAGCTCCTGCTGCAATGGTAATTTAACTCTGGGATTAAGCCAGCTTGTGACTTACTGCTGTGGTTCTGTACCCTACAATCCCCTAAATGAGATTTGCTGTAGTGGCAGTATTTTCATTCGAACTAGTGCTCACACTAAATGCTGTGGCAAGGACCCTTACCAAACAACGAATCATATATGTTGTGGTGATGTATtgctgaaaaaacaacaaaagaagaaaTGTTGTGGCAAGGAACTATTTGACACACTGACCGAGTGCTGCTGTGACCAAGACCTAGTCTTAGCAATAAAGCCCAAAAGTGATCCTTGCTGTCAGACTAAACCAGTTGAAAAATCTGAATCCTCACAATGCTCTCAGGCCTCTGGAGCGCACAACAATATTGCAGAGAATTGTGGATCCTATGATCCTCAGACACATATTTGTTGCTCAGGGTTTCTGTACAGGAAGGCATCAGAACTTACTAAGTGCTGCGGAAAACACCTTTACACTTTCTCCGAGGGAAACGTTCTGTGTTGTAATGGAATCTTGCATCGAGATATGCCTGAGAAGTCAGAATGTATTGGAGGTGTTGTATATTCTCCAGGAAACACTACATGCCATCTGCCTGTTCGTCCCCAAATTGGCGAGCACTGTTGTGGAAATCAAACCTTCGATCCTCTTATCCATATTTGCTGTAATGGACACAGACACAACAAGAAAAATGGTAATGTCTGTTGTGGTTCCAAAGTCTATGACCACCACAACACGTCCTTGAGGTGCTGCTCTGATCATCTTTACAGTACACCTAGTGGAGAAGTAGAGTGCTGTGGAAACCACTTGCTGGAAAAAAATCAAATTTGCTGTTCCTCCTCAACCCTGGCCGTGAAATATTTCACCAAATTGAATCACCATTGCTGTGGGCATTACTACTACAACAAGTCCATCTGGAGTTGCTGTGCTGAACACCTTAAACCAACACCGGAGCGTCACACCCCTCTTGCAGACTACAGGACTAAACCACTAATGGAGCTTATCCCAGACATATGCAAAAAACCAGTGTTCTTTGGCAAAGTGGAGAGCATGACCCTTAAAACCTCTTGGCGTCATGTTCTGTTGCAAGTCGTTTGGCAGGTGGATTTGAAGTTGAGAAATGTCACTAAAGACTCTTGGGATCACGTGTTCATGGATCACTGCAGCTCTCCTGTTATTGAGAAAGGCATGATCTACCTTTGGGAGAAAGAGGCCAATGGGTCTAAGCTTCTGTCACACCCTATTGACCAAGCCTCTGACATTCACATGTTCTATTTTTTATGTTACCAATTTAAGGATCACAAAAATGGATAGAAATGTGGAATGAGGTCTATCATGAGATTTCTGACCCCAGTAATTGAATGGTCACTGTATTTGTAAGCTGAACATTTATTTCAACCTTAAATCAAACAAAGTGTCAGTTAGTGTAGGCATGATTATGGCAGAGGCATCACACGTTGCACATCTGTCATTGTTGCCTACAGTGAACTGATCTTGTTTGGAGTGATCTGTTAAGCTATTAATCAGTAACAACAGTATACCGAGTTATCATACAAACATTATATAAGCATTTTtcttgtactgtatttttatatattatcagTCTCAGGTCTATCAAATTTATGTTTTAACAATTTGACAAGTCTGAAGGACTATGTGCTATAGTTTAAAAGGTGCTTTTAAACTTAAttgtcgttttaaagaatgttcTTTATAATAACACACTCAAATATATTTTCTGCATATTTGCTGGTTATCTTACTTTTTTAACAGCAATAAGCTTGGAGCTGAGTATTTCTCATTTTACTTCTTTTCACTGAATGAAAGATTGGTAGGTTTGTTACTACTAGCCAAACATTGGTCTTCATTTACTAATAAAAGTCAACATTTTTGTAGAGAGAAATCttcaaatgacttttttttcttgGTCTCAAGTCTTGGTTCACTGATAAATTTgcactaaatatatttttgtaggTAAGTTTACAATTTTGGAATGTGATGTGCTAAGACACACTTTGTATTAATGTGCAATTGGACCTGTTGTGAATCTCACACCATTTTTTTGTGAAGTTCTcctgtatttacaaatacaaaagtAGGAATCTACACTACATAATTATTAGTAAATGAGACTAATTGTATGCAATACAGATAATTTATTTTGTAACTTCTAGATTTATACACAAACAACTGTGAAGAAGTGCTAATCAGACAGATTCCATATAATCATTGTGTGACTCGTGTTTGCTAATGTGAGTTAAATTTCGACTTGCAGATATTGCACTTGGCAAGAAATGCTATAATCATTGCCATTTGTGATTGTATGTCAAACAATTTTCTAAATAAAGCATTAGAAGCATTGAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-210 No description available

Ensembl:

ensembl_id ENSDARG00000096365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025773 False 954 mRNA 0.44 9 35128685 35143264
TCONS_00025774 False 848 lncRNA 0.40 7 35128751 35132688
TCONS_00025775 True 2466 mRNA 0.38 9 35130416 35148310

Neighbor

gene id symbol gene type direction distance location
XLOC_012937 NA coding upstream 52911 35075415 ~ 35075774 (+)
XLOC_012936 AL935279.1 coding upstream 54048 35072976 ~ 35074637 (+)
XLOC_012935 NA coding upstream 90276 34942728 ~ 35038409 (+)
XLOC_012934 LO018333.1 coding upstream 193507 34861568 ~ 34935178 (+)
XLOC_012933 CR626874.1 coding upstream 291877 34667486 ~ 34836808 (+)
XLOC_012939 cfap45 coding downstream 25373 35173683 ~ 35197599 (+)
XLOC_012940 tbrg1 coding downstream 80805 35229115 ~ 35251377 (+)
XLOC_012941 C18H19orf54 coding downstream 259611 35407921 ~ 35413608 (+)
XLOC_012942 NA coding downstream 282696 35431006 ~ 35431848 (+)
XLOC_012943 rasgrp4 coding downstream 594528 35742838 ~ 35802483 (+)
XLOC_012928 NA non-coding upstream 1080018 34028272 ~ 34048667 (+)
XLOC_012923 CU463109.2 non-coding upstream 1381570 33735335 ~ 33747115 (+)
XLOC_012944 CR377223.1 non-coding downstream 658538 35806848 ~ 35806966 (+)
XLOC_012945 CR377223.2 non-coding downstream 671139 35819449 ~ 35819563 (+)
XLOC_012949 NA non-coding downstream 992906 36141216 ~ 36409313 (+)
XLOC_012956 NA non-coding downstream 1736307 36884617 ~ 36884817 (+)

Expression


Co-expression Network