XLOC_001295 (spp2)


Basic Information

Item Value
gene id XLOC_001295
gene name spp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29743442 ~ 29747702 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002113
AGGAACAGTTCAAATCAGCACCGTTTAGTGGTAGAAGCATCCAGTCTGAACTGACAGATGAAAATGAGGTGCTGTGTTTTTCTCTATCTGCTCCTGCAGGTTTTGGGAGGTTTAGGTCTTCCCCTTTTCGAGCTAAGCTCCAAAGCAGATGATGCTCTTCAGATGGCCCTCAATGAGATCAATGCACACTACACCAGGATTCACCTCTACAGAGTGTCCAAGGCATCTGTGAAGAAGATTGTTCCTCTGGGCATGAACACATTTGATCTGCATCTGAAGTTTGGCATTAGGGAGACCGAGTGCAAGAAAAGCTCTGGACTCGACCCTCAGGGCTGCATGTACCGCAAGGGATTTTTTGTGGCAaAGGCAGGATGTTATATGAGAGCGCGAACGACACTGCAATCCACTCGTATCATCGCTCTCAGATGCACAAAGGCAGACAGCTTAAGCTCTGAGTCCAGTGAAGAGGGAGCATTAACATCATACATCGATTTAAATCATTTCTGGTTTACAGATCGCACACATTCAACTACATCGCCAAGCATTCACCTTGGTCCACCAATGCATGAGAGCCATCATGCCAACAGAGAAGACAGCCACGTTCGTGGAGATCACTTCAACAATCATCTGCCATATCACTGACCTCGCATGAAGATTCTTCATACTAAAAAATTAAGGTGCTACAAACATAAAGCTAAACCAAAAGActactgtactacaaaaaaaaatccccTAGAAGCCTGTAACTTTATAGACTGTACATAAATATGAACAGAAACCCGCTGACTAGGAAACCCAAAGAAAGAAACAACCACGCATGATATCAACAtgtataatttcattttaaattacacattttgcaGAGAGATATGTAGAGCATGATGTTCATAGACCTTCCATGTATCAAGACCGGATacttaataatttaacattaccTTCAGTTTGTTACTTCTTATCTTGATAAGTTCCATGATATTGTAAATACATTCAATAAACAAATCCTTCAAAATGAAATAA
>TCONS_00002114
AGGAACAGTTCAAATCAGCACCGTTTAGTGGTAGAAGCATCCAGTCTGAACTGACAGATGAAAATGAGGTGCTGTGTTTTTCTCTATCTGCTCCTGCAGGTTTTGGGAGGTTTAGGTCTTCCCCTTTTCGAGCTAAGCTCCAAAGCAGATGATGCTCTTCAGATGGCCCTCAATGAGATCAATGCACACTACACCAGGATTCACCTCTACAGAGTGTCCAAGGCATCTGTGAAGAAGATTGTTCCTCTGGGCATGAACACATTTGATCTGCATCTGAAGTTTGGCATTAGGGAGACCGAGTGCAAGAAAAGCTCTGGACTCGACCCTCAGGGCTGCATGTACCGCAAGGGATTTTTTGTGCCAGAGGCAGGATGTTATATGAGAGCGCGAACGACACTGCAATCCACTCGTATCATCGCTCTCAGATGCACAAAGGCAGACAGCTTAAGCTCTGAGTCCAGTGAAGAGGGAGCATTAACATCATACATCGATTTAAATCATTTCTGGTTTACAGATCGCACACATTCAACTACATCGCCAAGCATTCACCTTGGTCCACCAATGCATGAGAGCCATCATGCCAACAGAGAAGACAGCCACGTTCGTGGAGATCACTTCAACAATCATCTGCCATATCACTGACCTCGCATGAAGATTCTTCATACTAAAAAATTAAGGTGCTACAAACATAAAGCTAAACCAAAAGActactgtactacaaaaaaaaatccccTAGAAGCCTGTAACTTTATAGACTGTACATAAATATGAACAGAAACCCGCTGACTAGGAAACCCAAAGAAAGAAACAACCACGCATGATATCAACAtgtataatttcattttaaattacacattttgcaGAGAGATATGTAGAGCATGATGTTCATAGACCTTCCATGTATCAAGACCGGATacttaataatttaacattaccTTCAGTTTGTTACTTCTTATCTTGATAAGTTCCATGATATTGTAAATACATTCAATAAACAAATCCTTCAAAATG

Function

symbol description
spp2 Predicted to act upstream of or within bone remodeling. Predicted to be located in extracellular region. Is expressed in cranium.

GO:

id name namespace
GO:0046849 bone remodeling biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-223 Predicted to act upstream of or within bone remodeling. Predicted to be located in extracellular region. Is expressed in cranium.

Ensembl:

ensembl_id ENSDARG00000095590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002113 False 1017 mRNA 0.41 6 29743442 29747702
TCONS_00002114 True 1011 mRNA 0.41 6 29743448 29747702

Neighbor

gene id symbol gene type direction distance location
XLOC_001294 NA coding downstream 84665 29653949 ~ 29658777 (-)
XLOC_001293 si:dkey-1h24.2 coding downstream 89970 29608128 ~ 29653472 (-)
XLOC_001292 BX908780.4 coding downstream 416494 29323374 ~ 29326948 (-)
XLOC_001290 NA coding downstream 558215 29174502 ~ 29185227 (-)
XLOC_001291 NA coding downstream 565134 29176676 ~ 29178308 (-)
XLOC_001296 alg11 coding upstream 3235 29750937 ~ 29761086 (-)
XLOC_001297 march4l coding upstream 206988 29954690 ~ 30039332 (-)
XLOC_001298 BX255890.1 coding upstream 496829 30244531 ~ 30244645 (-)
XLOC_001299 CR382370.1 coding upstream 585500 30333202 ~ 30334829 (-)
XLOC_001300 C1H3orf70 coding upstream 596012 30343714 ~ 30366824 (-)
XLOC_001289 BX908780.3 non-coding downstream 574947 29167321 ~ 29168495 (-)
XLOC_001301 CR382370.2 non-coding upstream 691720 30439422 ~ 30441060 (-)
XLOC_001307 NA non-coding upstream 1080654 30828356 ~ 30842747 (-)
XLOC_001308 NA non-coding upstream 1090861 30838563 ~ 30878846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_00841319_00845716 SPP2 coding CI01000049 null 839723 ~ 845716 (-)