XLOC_001301 (CR382370.2)


Basic Information

Item Value
gene id XLOC_001301
gene name CR382370.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30439422 ~ 30441060 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002124
CAGCAGTGTACACACTTGAAAAAGCAGAATTTGATGTGTAATCTGCAATGTGTCTGTAGGTCCTGTAATAGGAGCCCATGGAAGCCTTTTTAGGTCTACCTGACACTCatgaatgtactgtatatgatgcTAATGCCTTCCGCAAGCATACTTTTTGTGGAGCAAATCAATAtacccccccctttttttttttttctccccctatTGTTATGCGCTGAAATGAGTGCACTGTTTCTTTTGAAAGTTCTTTTTGAAACGTGACATCAGAAAATGACGGAGAAAATGTCTGcaaactactattattatttgaatttttatttgtaaaaacatttcttTGATATATAATGACGATAAATTCAATAGGTGAAGAATAAAAATGACATCCTTAACCCTTGCACGTTGGAAAGGCCAATGGaatcaaatataaatgtatatatgctCAAAATACAGTTGACTGATCAAATGCAAACAACCAGCATTGCAGTTATGTACAGTTTAAACCTAATCATAGAGCATACTGTAAGATTGATATTAAGCATCCACGATTGAGATATGAAAATCATATTTTGAAAGTCCACACAGCTGTGTGTGAATCAGTACAATATAACGTTCTACCTCAAGAACAGGGTACCTCAGTCCGATCTTTTCTCCCTTTTGCATATTTTGTATACCTTGTAGAGCTCTCAAACTtagagctttttttatttttctaaataaaagaacaagaaaaaaagagTTAGCGCAAGGCACAAATAAGACCTGCTCGTTCTTGCAAAAAGAGGTTTCAGACCGCTTCACGAGAAACTAATCGTTGCTTTATGGACCGTTTGGATCGAATGAACTCTGAGGTTAAAACAACTCTTGGGCAACTGAACATTTGGGTTGACAGTACTTCGTTTCTTGCAGTTTTATGTTTGTACTAAAATAATCGTCTCAACAAGTAGTCTTGTCTAAGAATACAGCTTAATCCAACTATACGCAGTGTTCTTTAGCCTGTATGGAGACATTTAGAAAATGTTATCTTTATGTTACTGTTACAAATGGCTCTGTAGTTTATAATCTGTATTTCAAGGTCATGTCTGATGAAATGGCCACTAACACGTCAGCTTTGAATTTATTCTAACATCGTATTTGTGTGAGGTTTTAGTATAGGAATAATCTCCGACAGTTTAATATTAGTGTAATAACAGTAGGCACGATTGAATTTGATCTTTTCAATTTGGgtttctgtagaaaaaaaattgctgtgTCAAACCGGATGGTGTCCGGCTGTCTCAAGACCATCTCTTCTCATATCATTTACAAAGACATCATGTAGATGAAACATAATCTTTGCCGTAGTACTTATCTGCAGCTGTTTCTGTGTCTGTTTCTCATGTCTTTCTAGACCACATATAATAAATCACTTTGGGTGTTAATGCTGATCTGACATCAGTTTTTGATATCGATTCATATAATGACATCATGTGAAGTCAATGAAGGGTAAACAAACTAATTTCAGACTTAGGGTGTTAGTTAAAAGTGGGAGGGTTAAGTGAATATTCATGAATACACttgtctgtttttatgttttttggaaGGGTCACAATACCTTCCTTATGGATTTGAGCAATAAAGAGTGTTTCAAACAACATCTAAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096632

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002124 True 1639 lncRNA 0.35 1 30439422 30441060

Neighbor

gene id symbol gene type direction distance location
XLOC_001300 C1H3orf70 coding downstream 72598 30343714 ~ 30366824 (-)
XLOC_001299 CR382370.1 coding downstream 104593 30333202 ~ 30334829 (-)
XLOC_001298 BX255890.1 coding downstream 194777 30244531 ~ 30244645 (-)
XLOC_001297 march4l coding downstream 400090 29954690 ~ 30039332 (-)
XLOC_001296 alg11 coding downstream 678336 29750937 ~ 29761086 (-)
XLOC_001302 igf2bp2b coding upstream 2133 30443193 ~ 30510957 (-)
XLOC_001303 ubac2 coding upstream 98911 30539971 ~ 30568225 (-)
XLOC_001304 dachc coding upstream 144080 30585140 ~ 30689004 (-)
XLOC_001305 MZT1 coding upstream 277186 30718246 ~ 30723258 (-)
XLOC_001306 dis3 coding upstream 295389 30736449 ~ 30762264 (-)
XLOC_001294 NA non-coding downstream 780645 29653949 ~ 29658777 (-)
XLOC_001292 BX908780.4 non-coding downstream 1112474 29323374 ~ 29326948 (-)
XLOC_001291 NA non-coding downstream 1261114 29176676 ~ 29178308 (-)
XLOC_001307 NA non-coding upstream 387296 30828356 ~ 30842747 (-)
XLOC_001308 NA non-coding upstream 397503 30838563 ~ 30878846 (-)
XLOC_001309 BX548015.1 non-coding upstream 478276 30919336 ~ 30923141 (-)
XLOC_001313 BX284697.2 non-coding upstream 847476 31288536 ~ 31296246 (-)
XLOC_001317 NA non-coding upstream 1157258 31598318 ~ 31600848 (-)
XLOC_001290 NA non-coding downstream 1254195 29174502 ~ 29185227 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G205837 NA non-coding CI01000049 null 1243945 ~ 1246446 (+)
eurasian perch (Perca fluviatilis) G172467 LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581 non-coding NC_053128.1 CM020925.1 3464096 ~ 3475048 (+)