G460455


Basic Information

Item Value
gene id G460455
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000323
NCBI id null
chromosome length 493539
location 475460 ~ 476111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU528604
TTTTCTTGCCTTTGTTATACAAAGATGTTAAATAACTTAAATACATTCTTACCAGTCATTCATGATCAGTTTATACCTACAAGCTATACACATGAGGTAGAGGAAAATAATTTAGAGGAAAATAGATTCCCATTAGACAAGAAAAAGTGGACAAAGACAAACTACTGACAAAAACTCTGCCCTTAAAAGAAAAAGAATGCATTTTAATAGTTGCAGCATTGCACAAACCCTGACAAAAATCAGAATAGTGACCAAGCTATTGGAAAATAATAAAGAAAAAAATTACTGTGCATTTGTCAAATGCTAAGTGTCTGCAATCCATTCTCAATAAATGTAAATCTAAACAATGAACTCACTTGCTGGTTCTTAAAGTTATGTTTATTAGCCTTTATGCTACAAATAATGAGATTGTTACAGCTAACTCGGGAGGGGAGGGGAGGGTTGGGGTCATATACCTCAACCCCAAAAAGCAAATACCCAATTATAAGCCAAATGAAAGACAGAGAATATATATCTAGAAAATCATCTTCAGTTTTACAAAATGTACAAATAACACATGCTCATAAAACATTTCAAAATATATTGTCTCTGTGTCCTTTTTCCACAACCACATACATTTTATACACATTGCATTGGAAAGTAAGATTAAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU528604 True 652 lncRNA 0.32 1 475460 476111

Neighbor

gene id symbol gene type direction distance location
CI01000323_00404644_00405142 NA coding downstream 70318 404125 ~ 405142 (-)
CI01000323_00328972_00333383 NA coding downstream 141913 328967 ~ 333547 (-)
CI01000323_00121706_00125427 NA coding downstream 350033 120874 ~ 125427 (-)
CI01000323_00058863_00066027 WNT3A, WNT3A.L coding downstream 409433 58414 ~ 66027 (-)
CI01000323_00008871_00010120 NA coding downstream 465340 8688 ~ 10120 (-)
CI01000323_00488566_00489842 NA coding upstream 11325 487436 ~ 489842 (-)
G460457 NA non-coding downstream 84 474871 ~ 475376 (-)
G460434 NA non-coding downstream 29558 439511 ~ 445902 (-)
G460200 NA non-coding downstream 306403 95378 ~ 169057 (-)
G460191 NA non-coding downstream 392299 82887 ~ 83161 (-)
G460069 NA non-coding downstream 434140 41030 ~ 41320 (-)
G460459 NA non-coding upstream 1744 477855 ~ 478215 (-)
G460460 NA non-coding upstream 3006 479117 ~ 479357 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138309 NA non-coding CI01000027 null 1003993 ~ 1004346 (+)
eurasian perch (Perca fluviatilis) G116583 wnt9a non-coding NC_053122.1 CM020919.1 21129608 ~ 21134012 (+)
bowfin (Amia calva) G31346 NA non-coding CM030124.1 CM030124.1 2854448 ~ 2856659 (-)