XLOC_001320 (pnpla4)


Basic Information

Item Value
gene id XLOC_001320
gene name pnpla4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 32097179 ~ 32111924 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002163
AAAGTGCGAACTGTAGTGCAGTAAAGCGCCAAATCATTTAAACAGGTGTGATGGTGGTAAATGTCTCGTTTGCTGCGGCTGGGTTTTTAGGAGCATATCATCTCGGTGTAGCAAAGGCGTTACTGATGCATGGAGATAAACTGCTGTCCTCTTTAAAAGCCTGCGCTGGAGCTTCAGCTGGTGCTTTAGTGGCCGCTATGATGATCACTGCTCCTGATAAACTGCAGCATTGTAAGGAATTCACCTACAGGTTTGCCAGTAATGTAAGAAGTCAGAGGTTTGGAGCGGTGACACCTGGATATGACTTCATGCTTGAACTGAGGGAGGGTATCGAACAGATTCTCCCACCCAGTGCGCACCAGTTAGCCAATGAACGCCTCCACGTTTCAATAACACACTCAAAAACGCACAAGAACAGCATGGTGTCCAGCTTCACCTCCAGGGAAGATCTCATTAAGgtGCTCTTGGCCAGCTGTTTCGTGCCTGTCTATGCTGGAGTGAAGCCAGTGGAGTTCCAAGGGCAGAAATGGATAGATGGGGGCTTCACAGACAGCCTTCCTATTCTTCCTGTGGGACGCACAATCACAGTGTCACCTTTTAGTGGCCCTCAGGATATTTCCCCAGAGCACAAGGGCAAGAAAAATCTTCACCTCAGACTAGCAAACATGAGCATTGTGTTCTCAAAGGAAAACATCATAAGGCTGAACCAAGCTCTGTTTCCTCCTCCATTACCCAGACTTGAGGCACTGGAGCAAGAGGGATACCAAGACGCTCTTCGGTTTTTGAAGAAAGAAAAATGGTTGCAATAACTGATTTACACATTTGTAGCACTTTCAGCACCTCGATTGTCAGAAATGTGGCATATTGACACCATTTAGAGACTATTTTCCTCAGCCGTTCCTTTGGGGTGTGCAGTATTTTTCAGTGTAATAACCATACTTGGACTTGGGCTTTTTCGTTTTTAGAATGAAAGCAGACGCCATACAGTACATTATGTATTTCAGGAGGCTGCATGATCAGTCATTTTCTGGTACTTTAACTCTAAAATGCGCTCCGTCAAGAGCCAAAACTGCTCTCAGAACACACCGTGTTCTTTAAGAATGACTTAATGAAGTGTTTACATATTTCTGAAA
>TCONS_00002164
CGGAAGCTGTGCACGTGCTTTGCTGTGTTGTCAAACAAACTCAAAGTGCGAACTGTAGTGCAGTAAAGCGCCAAATCATTTAAACAGGTGTGATGGTGGTAAATGTCTCGTTTGCTGCGGCTGGGTTTTTAGGAGCATATCATCTCGGTGTAGCAAAGGCGTTACTGATGCATGGAGATAAACTGCTGTCCTCTTTAAAAGCCTGCGCTGGAGCTTCAGCTGGTGCTTTAGTGGCCGCTATGATGATCACTGCTCCTGATAAACTGCAGCATTGTAAGGAATTCACCTACAGGTTTGCCAGTAATGTAAGAAGTCAGAGGTTTGGAGCGGTGACACCTGGATATGACTTCATGCTTGAACTGAGGGAGGGTATCGAACAGATTCTCCCACCCAGTGCGCACCAGTTAGCCAATGAACGCCTCCACGTTTCAATAACACACTCAAAAACGCACAAGAACAGCATGGTGTCCAGCTTCACCTCCAGGGAAGATCTCATTAAGGTATTCAAGCCTGAGGTCAATAGACAATGATTTATCTTCCAGCCACTCGAGTGATGCTCACAACCCAAAGGGAACTCTCCTATTCAATTAGACACATCATAAGTGCCGTCACTGGACAGGGTTAGTGCTGTGGAAAATTGCTACtgagttcattaattcattcccATCTGAAATAAAGAACAAATTGCA
>TCONS_00003431
TGGCCGCTATGATGATCACTGCTCCTGATAAACTGCAGggggaaaccggagcacccggaggaaacccacgcgaacgcaggaagaacatgcaaactccacacagaaacatcgaggctggaaccagcaacccagcaaccttcttgctgtgaggcgacagcactacctactgtgccactgcgtcacctatgaAATAATAACatctattattatcaataataatacatttaaaacataataacacGGGAAATTAAATTTCATTTGGGCCCCTTTGTGCCAGTTCTTACCCAAAGTGATTACCCCAatcttttacagaaaaaaataaaataaataaatatttatactgCAAATCTAAGAATGTCCACAAACTCCttattaacataaaaattaaatgtaatacaaaataaaatggcATGGCTCAGTATTGTCCACAGACACAGTGTAACAGATGTAGATATTCAGATGAAATGGCAAAATTAAAAATAGAATAGTTGTTTATCAAAATGGTGTGGGTGAGATGTTTTGCTGGCAGTGCATGGTGCAGTACCTATCTTATAACATTCTTAAACACATACACTTATACAACTGCCATTATGGGGACTTTTGTAGATGTAAGGATTTTTGatactgtaaaaactgctaaTTCTGCCACCCTACCACaaacctcacaggaaacaatcatCTGCATTGTTACATTTTCTAAATActtaattatgtgtgtaatttATGAGCTATTTTTTTCATGGACACCAAAAAATTTACCCAAAAGGTCAAAAATCACTTGTTTTGCTGTAGTTGTGGGAAGTTTTGCTTAGATCCCCTCAAAGTAAGTGATAGAAGGTAAGCACAAACATGCACGCACACTTTACCCccttaaatcactttttttgttgttgttgttgcatcaTTTAATCTTTGAACTATTATTTAATCAACAaaagccactataaataaaaatatttatttatgttaatacaATACTGTATTATTATATGTAGGCAGATTTTCAATCTGATTATTTTTCATGTTTCAGGGCTGAGAAGGTACTGTAGTGTTTGTGAAAACAGACTGATTGTTTAGACTTGAAATAGATTGATTTGTTCTCTGTCAAGCCAGCAGCTATTGAAAATACATATTTCTTACTGTTGCATCACCAAGGCTCTGAGACGAGACTGACTGAGCTCTTTACCTATATGTTCTGACTTTGTGTTTTCACACAGCATTGTAAGGAATTCACCTACAGGTTTGCCAGTAATGTAAGAAGTCAGAGGTTTGGA
>TCONS_00003432
GTAGTGCAGTAAAGCGCCAAATCATTTAAACAGGAGCATATCATCTCGGTGTAGCAAAGGCGTTACTGATGCATGGAGATAAACTGCTGTCCTCTTTAAAAGCCTGCGCTGGAGCTTCAGCTGGTGCTTTAGTGGCCGCTATGATGATCACTGCTCCTGATAAACTGCAGGTAAAGCCATTCACCCCACAGCATGTAAAAACTGTACTGTGCTCAACCAAAGTAGTTAGAATGTTGAAGTTAAGCCTCACTCACAGTAGAAGAGGTGAGACGTGGTTAAAAGCTAAAAATCTACATGAATGTAGTTTGCATTTTGCTTTTTAAGTGTAACATTTAAGATTATCATACAGTATGGTGATTTATGGGTTAGTTCTATAGTTTTaggaaacataattaaaaatgtggTACTTAACCAAATTTGTTACATACCTAAACATTGGCTGTGATAACAACACATTGTAACAATGTCTAAAGTCCCACCACTttgataatattaatagttaGATATCTTTAGCCTCTTTGCATGTgtcattaataaaacatattaaaattactttaaacatCCATATAGTTCAGCTGAATAAGCTTAGATATTAgatattaactttatttattttaattgaagattagatattaactttatttattttaattaaagataaGTCACATTAGCAAGTTAGCAAcactgtaaatttacatttaatgatttttttatcaGCTTTGAAATTGAAATCAAGTTTTATGATAATTTTCAAGATGTCTGAAACATATAATTCGAGGAATTATGAAATAATAttctttcactcattcattttcttttcggcttagtccctttattaatccggggtcgccacagcagaataaacagaccatttattcagcacgtttttattcagcggatgcccttccaaccgcaacccatctctgggaaacattcatccacactcagtcattcacacacacactcatacactacggacaatttagcctatccaattcacctgtaccgcatgtctttggactaagggggaaaccggagcacccggaggaaacccacgcgaacgcaggaagaacatgcaaactccacacagaaacatcgaggctggaaccagcaacccagcaaccttcttgctgtgaggcgacagcactacctactgtgccactgcgtcacctatgaAATAATAACatctattattatcaataataatacatttaaaacataataacacGGGAAATTAAATTTCATTTGGGCCCCTTTGTGCCAGTTCTTACCCAAAGTGATTACCCCAatcttttacagaaaaaaataaaataaataaatatttatactgCAAATCTAAGAATGTCCACAAACTCCttattaacataaaaattaaatgtaatacaaaataaaatggcATGGCTCAGTATTGTCCACAGACACAGTGTAACAGATGTAGATATTCAGATGAAATGGCAAAATTAAAAATAGAATAGTTGTTTATCAAAATGGTGTGGGTGAGATGTTTTGCTGGCAGTGCATGGTGCAGTACCTATCTTATAACATTCTTAAACACATACACTTATACAACTGCCATTATGGGGACTTTTGTAGATGTAAGGATTTTTGatactgtaaaaactgctaaTTCTGCCACCCTACCACaaacctcacaggaaacaatcatCTGCATTGTTACATTTTCTAAATActtaattatgtgtgtaatttATGAGCTATTTTTTTCATGGACACCAAAAAATTTACCCAAAAGGTCAAAAATCACTTGTTTTGCTGTAGTTGTGGGAAGTTTTGCTTAGATCCCCTCAAAGTAAGTGATAGAAGGTAAGCACAAACATGCACGCACACTTTACCCccttaaatcactttttttgttgttgttgttgcatcaTTTAATCTTTGAACTATTATTTAATCAACAaaagccactataaataaaaatatttatttatgttaatacaATACTGTATTATTATATGTAGGCAGATTTTCAATCTGATTATTTTTCATGTTTCAGGGCTGAGAAGGTACTGTAGTGTTTGTGAAAACAGACTGATTGTTTAGACTTGAAATAGATTGATTTGTTCTCTGTCAAGCCAGCAGCTATTGAAAATACATATTTCTTACTGTTGCATCACCAAGGCTCTGAGACGAGACTGACTGAGCTCTTTACCTATATGTTCTGACTTTGTGTTTTCACACAGCATTGTAAGGAATTCACCTACAGGTTTGCCAGTAATGTAAGAAGTCAGAGGTTTGGA

Function

symbol description
pnpla4 Predicted to enable triglyceride lipase activity. Predicted to be involved in lipid homeostasis and triglyceride catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; lipid droplet; and membrane. Orthologous to human PNPLA4 (patatin like phospholipase domain containing 4).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055088 lipid homeostasis biological_process
GO:0019433 triglyceride catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005811 lipid droplet cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004806 triglyceride lipase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0050253 retinyl-palmitate esterase activity molecular_function

KEGG:

id description
ko00830 Retinol metabolism

ZFIN:

id description
ZDB-GENE-070410-74 Predicted to enable triglyceride lipase activity. Predicted to be involved in lipid homeostasis and triglyceride catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; lipid droplet; and membrane. Orthologous to human PNPLA4 (patatin like phospholipase domain containing 4).

Ensembl:

ensembl_id ENSDARG00000069834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002163 False 1133 mRNA 0.45 7 32097179 32111882
TCONS_00002164 False 689 mRNA 0.46 4 32101084 32111924
TCONS_00003431 False 1274 lncRNA 0.36 2 32109354 32111482
TCONS_00003432 True 2261 lncRNA 0.35 2 32109354 32111870

Neighbor

gene id symbol gene type direction distance location
XLOC_001319 nt5c2b coding downstream 240503 31809173 ~ 31856676 (-)
XLOC_001318 dpcd coding downstream 439325 31654203 ~ 31657854 (-)
XLOC_001317 NA coding downstream 496331 31598318 ~ 31600848 (-)
XLOC_001316 lbx1b coding downstream 563090 31531990 ~ 31534089 (-)
XLOC_001315 cenpk coding downstream 581067 31508739 ~ 31516112 (-)
XLOC_001321 CR925879.1 coding upstream 204411 32316335 ~ 32318911 (-)
XLOC_001322 NA coding upstream 479892 32591816 ~ 32648729 (-)
XLOC_001323 CU929192.1 coding upstream 889635 33001559 ~ 33001673 (-)
XLOC_001324 NA coding upstream 1213031 33324955 ~ 33328747 (-)
XLOC_001325 gyg2 coding upstream 1224999 33336923 ~ 33380340 (-)
XLOC_001313 BX284697.2 non-coding downstream 800933 31288536 ~ 31296246 (-)
XLOC_001309 BX548015.1 non-coding downstream 1174038 30919336 ~ 30923141 (-)
XLOC_001308 NA non-coding downstream 1218333 30838563 ~ 30878846 (-)
XLOC_001307 NA non-coding downstream 1254432 30828356 ~ 30842747 (-)
XLOC_001327 NA non-coding upstream 1512332 33624256 ~ 33666908 (-)

Expression


Co-expression Network