XLOC_001318 (dpcd)


Basic Information

Item Value
gene id XLOC_001318
gene name dpcd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31654203 ~ 31657854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002157
AAACGGATCTACTTCCGGGTCGTAGAGTTGGCTTCTtttattaaacatgaaaaaaatgcaGCACTTTTTCACTTTTTGCAACATGTAATACTTCAAATCGATTAATCGTGTATACAATTctgttaaatgtataaaaaagataaaagagcTTGTTTGAAATAGAGGTTGTCAAGGCAACCGCAGGCGCGGGTTTGTTTGAGGAAATGAATCAGCAGGAAGCATGGCTGTTCAACAGTGGGCTGATGCTCTTAAAAAAGCCAAGAAAACTGCTTTAATATCCGATGGGAAAAGGAAAGTTCATTATCAGTTTGAGGATGGCAATGAGATGGCTGAGGAGTATGACCTAAAAACAGATGAGCTTGTCATGCGAAAGTGGCGACATAAAACCACCTTTGGAGGACAGGGGCAGTGGACTTTGGAAGTTGGTGAAACAAACCCAACTGGGGCTACATCTGATTTAATAAAAGAGAACAGTTCAAATCCACTATTTATGCGCCGGGACACAAAGACAAGTTTCCAGTGGAGGATCCGTAACATTTCTTACCCTTTAGAAGTCTACAGTGTGACAGCTGAGCCAATGGAAAGATGTTGTGTCATTCGGACCTCGAACAAAAAGTACTATAAGAAGTTCAGCATTCCAGATCTCGAGCGTTGCCAGTTGCCTTTGGAGAGCACAGCCTTGAGTTTCACCCACGCCAACAACACTTTAATCATCAGCTACAAGAAGCCCAAAGAGATTTTAACGCTGGAACAGGAGCTGCTTGGGGAGCTGAAGAAACTGAAGGGGACAAGTGAAGGAGATATTGACTGTAAAACTCAGTGAACTGCTGTGGATCTGGAGCTTTTGCAGTATTGCGGCTGTTCGGCTGCATTTCTTTATGCATGTTTCTATAAGCTTTTGTGCATACAAACATGTGACTTTTGTtgtatgtatacatttttttgttgagaTATACCATTTGAAATATTGAGCTGGATGATGTAAAATTGTTTGTTGTGTCCAAATAATAAATTTCACAGAAATGTCA
>TCONS_00002158
AGCAGGAAGCATGGCTGTTCAACAGTGGGCTGATGCTCTTAAAAAAGCCAAGAAAACTGCTTTAATATCCGATGGGAAAAGGAAAGTTCATTATCAGTTTGAGGATGGCAATGAGATGGCTGAGGAGTATGACCTAAAAACAGATGAGCTTGTCATGCGAAAGTGGCGACATAAAACCACCTTTGGAGGACAGGGGCAGTGGACTTTGGAAGTTGGTGAAACAAACCCAACTGGGGCTACATCTGATTTAATAAAAGAGAACAGTTCAAATCCACTATTTATGCGCCGGGACACAAAGACAAGTTTCCAGTGGAGGATCCGTAACATTTCTTACCCTTTAGAAGTCTACAGTGTGACAGCTGAGCCAATGGAAAGATGTTGTGTCATTCGGACCTCGAACAAAAATACAAGAAGCCCAAAGAGATTTTAACGCTGGAACAGGAGCTGCTTGGGGAGCTGAAGAAACTGAAGGGGACAAGTGAAGGAGATATTGACTGTAAAACTCAGTGAACTGCTGTGGATCTGGAGCTTTTGCAGTATTGCGGCTGTTCGGCTGCATTTCTTTATGCATGTTTCTATAAGCTTTTGTGCATACAAACATGTGACTTTTGTtgtatgtatacatttttttgttgagaTATACCATTTGAAATA

Function

symbol description
dpcd Orthologous to human DPCD (deleted in primary ciliary dyskinesia homolog (mouse)).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060825-166 Orthologous to human DPCD (deleted in primary ciliary dyskinesia homolog (mouse)).

Ensembl:

ensembl_id ENSDARG00000060501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002157 False 1028 mRNA 0.40 6 31654203 31657854
TCONS_00002158 True 654 mRNA 0.42 5 31654264 31657644

Neighbor

gene id symbol gene type direction distance location
XLOC_001317 NA coding downstream 53355 31598318 ~ 31600848 (-)
XLOC_001316 lbx1b coding downstream 120114 31531990 ~ 31534089 (-)
XLOC_001315 cenpk coding downstream 138091 31508739 ~ 31516112 (-)
XLOC_001314 rims1b coding downstream 149059 31374751 ~ 31505144 (-)
XLOC_001312 kcnq5b coding downstream 304055 31134942 ~ 31350148 (-)
XLOC_001319 nt5c2b coding upstream 151319 31809173 ~ 31856676 (-)
XLOC_001320 pnpla4 coding upstream 439325 32097179 ~ 32111924 (-)
XLOC_001321 CR925879.1 coding upstream 658481 32316335 ~ 32318911 (-)
XLOC_001322 NA coding upstream 933962 32591816 ~ 32648729 (-)
XLOC_001323 CU929192.1 coding upstream 1343705 33001559 ~ 33001673 (-)
XLOC_001313 BX284697.2 non-coding downstream 357957 31288536 ~ 31296246 (-)
XLOC_001309 BX548015.1 non-coding downstream 731062 30919336 ~ 30923141 (-)
XLOC_001308 NA non-coding downstream 775357 30838563 ~ 30878846 (-)
XLOC_001307 NA non-coding downstream 811456 30828356 ~ 30842747 (-)
XLOC_001324 NA non-coding upstream 1667101 33324955 ~ 33328747 (-)
XLOC_001327 NA non-coding upstream 1966402 33624256 ~ 33666908 (-)

Expression


Co-expression Network