RNA id: TCONS_00002158


Basic Information

Item Value
RNA id TCONS_00002158
length 654
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_001318
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31654203 ~ 31657854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGGAAGCATGGCTGTTCAACAGTGGGCTGATGCTCTTAAAAAAGCCAAGAAAACTGCTTTAATATCCGATGGGAAAAGGAAAGTTCATTATCAGTTTGAGGATGGCAATGAGATGGCTGAGGAGTATGACCTAAAAACAGATGAGCTTGTCATGCGAAAGTGGCGACATAAAACCACCTTTGGAGGACAGGGGCAGTGGACTTTGGAAGTTGGTGAAACAAACCCAACTGGGGCTACATCTGATTTAATAAAAGAGAACAGTTCAAATCCACTATTTATGCGCCGGGACACAAAGACAAGTTTCCAGTGGAGGATCCGTAACATTTCTTACCCTTTAGAAGTCTACAGTGTGACAGCTGAGCCAATGGAAAGATGTTGTGTCATTCGGACCTCGAACAAAAATACAAGAAGCCCAAAGAGATTTTAACGCTGGAACAGGAGCTGCTTGGGGAGCTGAAGAAACTGAAGGGGACAAGTGAAGGAGATATTGACTGTAAAACTCAGTGAACTGCTGTGGATCTGGAGCTTTTGCAGTATTGCGGCTGTTCGGCTGCATTTCTTTATGCATGTTTCTATAAGCTTTTGTGCATACAAACATGTGACTTTTGTtgtatgtatacatttttttgttgagaTATACCATTTGAAATA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060825-166 Orthologous to human DPCD (deleted in primary ciliary dyskinesia homolog (mouse)).

Ensembl:

ensembl_id ENSDART00000142296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003430 lncRNA downstream 53416 31598318 ~ 31600848 (-) True XLOC_001317
TCONS_00002155 lncRNA downstream 138183 31514641 ~ 31516081 (-) True XLOC_001315
TCONS_00002152 lncRNA downstream 142100 31508778 ~ 31512164 (-) False XLOC_001315
TCONS_00002149 lncRNA downstream 358018 31288536 ~ 31296246 (-) True XLOC_001313
TCONS_00002142 lncRNA downstream 731123 30919336 ~ 30923141 (-) True XLOC_001309
TCONS_00002159 lncRNA upstream 151529 31809173 ~ 31856630 (-) False XLOC_001319
TCONS_00002160 lncRNA upstream 151529 31809173 ~ 31856676 (-) False XLOC_001319
TCONS_00002162 lncRNA upstream 195349 31852993 ~ 31856641 (-) True XLOC_001319
TCONS_00003431 lncRNA upstream 451710 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00003432 lncRNA upstream 451710 32109354 ~ 32111870 (-) True XLOC_001320
TCONS_00002156 mRNA downstream 120175 31531990 ~ 31534089 (-) True XLOC_001316
TCONS_00002151 mRNA downstream 138152 31508739 ~ 31516112 (-) False XLOC_001315
TCONS_00002154 mRNA downstream 138173 31509530 ~ 31516091 (-) False XLOC_001315
TCONS_00002153 mRNA downstream 138518 31509028 ~ 31515746 (-) False XLOC_001315
TCONS_00002150 mRNA downstream 149120 31374751 ~ 31505144 (-) True XLOC_001314
TCONS_00002161 mRNA upstream 151541 31809185 ~ 31856622 (-) False XLOC_001319
TCONS_00002163 mRNA upstream 439535 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002164 mRNA upstream 443440 32101084 ~ 32111924 (-) False XLOC_001320
TCONS_00002167 mRNA upstream 1679279 33336923 ~ 33351780 (-) False XLOC_001325
TCONS_00002168 mRNA upstream 1679819 33337463 ~ 33353778 (-) False XLOC_001325
TCONS_00002139 other downstream 892010 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 1012728 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 1041774 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 1409619 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 2469037 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002165 other upstream 658691 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 1343915 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 1707539 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 2788964 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 3010592 34668236 ~ 34668351 (-) True XLOC_001333

Expression Profile

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